Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq141308 109 5e-19 seq68848 107 2e-18 seq31296 107 2e-18 >seq141308 Length=4330 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| ||||| || || || || || | ||| || ||| || ||| | | Sbjct 4279 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 4220 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| || || || || ||||| ||| Sbjct 4219 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTG 4160 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| ||| |||||| | | ||||| || | |||||| Sbjct 4159 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATG 4100 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||| ||||||||||| Sbjct 4099 GTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 4065 >seq68848 Length=10048 Score = 107 bits (118), Expect = 2e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||||||||| || || ||||| | ||| || ||| || || | ||||| Sbjct 7283 CACCAAGTGCAAAGTGGACTC-TTTTGGATGTTGTAGTCGGACAGGGTCCAGTCATCCTA 7341 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || |||| || | || ||||| || || || || ||||| ||||| | Sbjct 7342 CAGCTGCTTGCCTGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTG 7401 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || | |||||||| ||| |||||| | | | ||| |||| |||||||| || Sbjct 7402 GATCTCGGCCTTGACATTCTCGATGGTGTCACTGGGCTTGACCTCAAGAGTGATGGTCTT 7461 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || | || || |||||||||||||||||| Sbjct 7462 GCCCATCAGGGTCTTCACAAAGATCTGCATG 7492 >seq31296 Length=16870 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||||| || | || || |||||||| | ||| || || || ||| | Sbjct 14457 TCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGTACGGCC 14516 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||| | || |||||||| |||||||| ||||| || Sbjct 14517 ATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTT 14576 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || || || |||||||| | | |||||| | | | || || || | |||||| Sbjct 14577 ATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACCTCGAGCGTGAT 14636 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 |||||| || ||||| || ||||| || |||||||| || Sbjct 14637 GGTTTTCCCTGTAAGGGTCTTCACGAAAATCTGCATCCT 14675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446327348325600