Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq57299 158 2e-34 seq17494 156 7e-34 seq43072 154 2e-33 seq76697 131 3e-26 seq123997 122 1e-23 seq77331 122 1e-23 seq68138 84.2 3e-12 >seq57299 Length=11574 Score = 158 bits (174), Expect = 2e-34 Identities = 197/270 (73%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| ||| || || || ||||| || ||||||||||| || ||| Sbjct 10599 GCAAAGCGCCATCGCAAGGTTCTGCGCGACAATATCCAGGGCATCACCAAGCCCGCCATC 10540 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||| || || ||||| ||||| || |||| || | |||| || |||| Sbjct 10539 CGCCGCCTGGCCCGACGCGGTGGTGTCAAACGCATCTCCGGCCTCATCTACGAGGAGACC 10480 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||||| ||| ||| |||| || ||| || ||| || ||| Sbjct 10479 CGCGGAGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCTGTCACCTACACAGAG 10420 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| || ||||| |||||| |||||||| | ||||| || | || || || ||| Sbjct 10419 CACGCTAAGCGCAAGACCGTCACCGCCATGGATGTGGTCTACGCGCTCAAGCGCCAGGGC 10360 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | ||||| |||||| | ||| || Sbjct 10359 CGCACCCTGTATGGATTTGGAGGCTAAACT 10330 >seq17494 Length=27506 Score = 156 bits (172), Expect = 7e-34 Identities = 197/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| ||||| Sbjct 4996 CGCTAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCTAT 4937 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 4936 CCGCCGCCTGGCCCGGCGTGGAGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 4877 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 4876 TCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCGGTCACCTACACGGA 4817 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || || || |||||| ||||||| | ||||| || | || || || || Sbjct 4816 GCACGCCAAGCGCAAAACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 4757 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || ||| ||||| || Sbjct 4756 CCGCACTCTCTACGGCTTCGGAGGTTAAGCT 4726 >seq43072 Length=14066 Score = 154 bits (170), Expect = 2e-33 Identities = 193/262 (74%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || |||||||||||||| || || || ||||| || | Sbjct 8073 CGCCAAGCGACACCGCAAGGTC-CTGCGAGATAACATCCAGGGCATTACTAAGCCTGCCA 8015 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 8014 TCCGGCGCCTGGCTCGACGCGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGA 7955 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| | || | ||||| ||| || |||| || ||| || ||| |||| Sbjct 7954 CTCGCGGTGTCCTCAAAGTGTTCCTAGAGAATGTGATCCGAGACGCTGTCACCTACACCG 7895 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| | |||||| | |||||||| | || || || | Sbjct 7894 AGCACGCCAAGCGCAAGACGGTCACGGCTATGGATGTGGTCTATGCGCTCAAGCGCCAGG 7835 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||||| ||||||| || || Sbjct 7834 GCCGTACTCTTTATGGCTTCGG 7813 >seq76697 Length=9140 Score = 131 bits (144), Expect = 3e-26 Identities = 178/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || || ||||| || || || ||||| || | Sbjct 4504 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAATATCCAGGGCATTACAAAGCCCGCCA 4446 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 4445 TCCGCCGCTTGGCCCGGCGTGGAGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 4386 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| ||| |||| || || || ||| || | Sbjct 4385 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGG 4326 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | ||||| || | || || || | Sbjct 4325 AGCACGCCAAGCGCAAGACCGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGG 4266 Query 16671 GCCGTA 16676 |||||| Sbjct 4265 GCCGTA 4260 >seq123997 Length=5320 Score = 122 bits (134), Expect = 1e-23 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 205 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 147 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 146 TCCGCCGCCTGGCCCGGCGTGGAGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 87 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| || |||| || || || ||| || | Sbjct 86 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAATGTGATCCGCGACGCGGTCACCTACACGG 27 Query 16611 AGCACGCTAAACGTAAGACTGTCACC 16636 ||||||| || || ||||| |||||| Sbjct 26 AGCACGCCAAGCGCAAGACCGTCACC 1 >seq77331 Length=13785 Score = 122 bits (134), Expect = 1e-23 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 205 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 147 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 146 TCCGCCGCCTGGCCCGGCGTGGAGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 87 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | ||||| ||| || |||| || || || ||| || | Sbjct 86 CCCGCGGGGTGCTGAAGGTGTTCCTGGAGAATGTGATCCGCGACGCGGTCACCTACACGG 27 Query 16611 AGCACGCTAAACGTAAGACTGTCACC 16636 ||||||| || || ||||| |||||| Sbjct 26 AGCACGCCAAGCGCAAGACCGTCACC 1 >seq68138 Length=10137 Score = 84.2 bits (92), Expect = 3e-12 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || || |||||||| || ||||||||||| || || Sbjct 4184 CGCCAAGCGCCACCGTAAAGTCCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 4243 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||| || ||||| || ||||| ||||||||||| |||| || | |||| || |||| Sbjct 4244 CCGCCGCCTGGCCCGGCGTGGAGGAGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 4302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78754771968780