Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq125977 161 1e-34 seq55738 114 2e-20 seq18550 113 6e-20 seq36452 105 8e-18 seq172906 102 1e-16 seq42668 96.9 4e-15 seq59957 84.2 3e-11 >seq125977 Length=8618 Score = 161 bits (178), Expect = 1e-34 Identities = 192/260 (74%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33447 ||||| ||||| || || || || ||||| |||||||| |||||||| |||||| |||| Sbjct 4826 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAGAGGCC 4767 Query 33448 ATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCC 33504 | || || |||||||| | | | |||| ||||| | ||||| ||||| Sbjct 4766 ACAACTCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACACAGGGCCCAGACGGCC 4707 Query 33505 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 33564 |||||||| ||| ||||||| || || || ||||| |||||||| | | || || | Sbjct 4706 TTCTTTTTCACAGAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAA 4647 Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 ||||||| ||||| || || | || || |||||||| ||||| |||||||| ||||| Sbjct 4646 TCTTTAATGTAAGTGTCAATGAGGAGCCTGTACATTTCAGAATGTATGTTTTCCATGGCA 4587 Query 33625 ATCTGAAATCCGTAGAAACA 33644 || || || || |||||||| Sbjct 4586 ATTTGGAAGCCATAGAAACA 4567 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 |||||| || || || || ||||| | |||||| ||||| ||||| || |||||||||| Sbjct 5044 ACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAA 4985 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 33401 | || || || ||||| || || || || || ||||| ||||| || Sbjct 4984 ATGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGA 4939 >seq55738 Length=16555 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| || || |||||||| || || || ||||| || || || || | Sbjct 9267 CCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 9208 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || ||||| |||||||| |||||||| |||||||||| Sbjct 9207 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGG 9148 Query 33446 CAATAAGTCTCTCTCC 33461 | | || || ||||| Sbjct 9147 CCACAACTCGTTCTCC 9132 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/134 (74%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 32962 AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTTTGG 33018 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 11159 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 11100 Query 33019 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33078 || || ||||| || || || || || || || || ||||| | ||| |||||||||||| Sbjct 11099 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 11040 Query 33079 AAATCAAACGGATT 33092 || ||||||||||| Sbjct 11039 AAGTCAAACGGATT 11026 >seq18550 Length=27441 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 2463 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 2522 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| ||| ||||| ||||| ||||| ||||| || || | | |||| Sbjct 2523 GACTCATTATTCCCCAGAATCTGAGCGGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2582 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 2583 CTGTTTCTTATACCATA 2599 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 8745 CTCCACTCGCTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGATCCCGGGCTCG 8804 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 8805 TTGCTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 8864 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 8865 AGGCTCCAGGTAAATAGC 8882 >seq36452 Length=40126 Score = 105 bits (116), Expect = 8e-18 Identities = 173/244 (71%), Gaps = 9/244 (4%) Strand=Plus/Minus Query 31059 AAACC-CTTGATCTCCTCTATTTGTACTATCTAGAGATTGTACTTCTTCCAGTTCTGGAT 31117 ||||| | ||| ||||| | ||| |||| || | || |||||| ||| |||||| Sbjct 26947 AAACCTCCTGAGCTCCTTTCAGTGT--TATCCAGTGTTTCAACTTCTA--AGT-CTGGAT 26893 Query 31118 AATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTTACATTAAACGTAC 31177 || | || |||| | | || ||||| || || | ||| || | ||||| | |||| | Sbjct 26892 AAAAAATTCGTTCACAAATGAGCTGTGCAATCCGATCACCTTTTTTTACTTCAAACTTCT 26833 Query 31178 ATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTCGTCTATTACAC 31237 ||||||| |||| || | || || || ||||| ||||||||||||||||| |||| Sbjct 26832 CTTTTCCAAAGTTAAACAGCACAACACCAATATTTCCTCTATAATCTTCGTCTATGACAC 26773 Query 31238 CGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGAGCTATTCTACCAT 31294 || |||||| ||| || | |||| | || ||||||| | ||||| ||| |||| Sbjct 26772 CGGCTCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCGTGAAGCTACTCTTCCAT 26713 Query 31295 AGCA 31298 |||| Sbjct 26712 AGCA 26709 >seq172906 Length=2851 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || || || || || |||||||| || || |||||||||||||| ||||| | ||| || Sbjct 1439 TCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 1380 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| || || | ||| ||||| ||||| ||||| | ||||| || ||||||||||| Sbjct 1379 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGC 1321 >seq42668 Length=14146 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 540 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 481 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||| || |||||||||||||| || || || || |||||||| || | | |||| Sbjct 480 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCAGCCATCTTGAGAACAGTCT 421 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 420 TCTGAGAGATTTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 370 >seq59957 Length=11192 Score = 84.2 bits (92), Expect = 3e-11 Identities = 165/242 (68%), Gaps = 9/242 (4%) Strand=Plus/Minus Query 166105 TAGAGAATGATATAGAAAAGCATATCAAAAGACTTCGTGTTGTGCATTTCTGTGAGAAGA 166164 |||||| ||| ||||| ||| |||| | || | ||| | || ||||||||||| Sbjct 2977 TAGAGAGTGAAATAGAGAAGTGCATCAGACAGCTGCTTGTCGGTCACTTCTGTGAGAAAC 2918 Query 166165 AAGAGGACATCAAGTACACGTGTCGATTCATCAAGGTATATAAACCTGGGGATGAG-GCT 166223 ||||| | || | |||||| || ||||||| || ||| ||| || | | | ||| Sbjct 2917 AAGAGAAGATGAGGTACACATGCAAATTCATCCCAGTCCATAGACC-GGAGCCGTGTGCT 2859 Query 166224 ACCTCGACATACGTGTGCGCTATCAAAGTGGAAAGATGCTGTTGTGCTGTGTTTGCAGAT 166283 |||| || || || ||| |||||| |||| ||| |||||||||||||| | Sbjct 2858 -------CATATGTCTGTGCACTCAGAGTGGAGAGATTCTGCTGTGCTGTGTTTGCTGCA 2806 Query 166284 TGGCCAGAATCATGGTATATGGATACTAATGGTATCAAGAAGTATTCTCCAGATGAATGG 166343 ||| || || ||| | |||| || ||| | ||||||| | | |||| |||||| Sbjct 2805 GTGCCTGAGTCCTGGCACGTGGAAGACAAGGGTGTGAAGAAGTTTACCTCAGAGGAATGG 2746 Query 166344 GT 166345 || Sbjct 2745 GT 2744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620218224053600