Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq207837 127 1e-24 seq99405 113 3e-20 seq145936 109 4e-19 seq231339 104 2e-17 seq91336 104 2e-17 seq72426 104 2e-17 >seq207837 Length=1616 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 486 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 545 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 546 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 580 >seq99405 Length=7045 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||||||||||||||||||||||||| || ||||||||| |||| |||||||| Sbjct 4634 AAGCCCGTTCCCTTGGCTGTGGTTTCGCAGGACAGTAGATAGGGACAGGGGGAATCTCGT 4575 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||| |||||||| ||||||||| Sbjct 4574 TCATCCGTTCATGCGCATCACTAATCAGATGACGA 4540 >seq145936 Length=4971 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| ||| ||||||| ||||| || |||||||| Sbjct 2565 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTGCATAGTAGGTAGGGACAGTGGGAATCTCGT 2624 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| ||||||||||||| ||||| Sbjct 2625 TCATCCATTCATGCGTGTCACTAATTAGAAGACGA 2659 >seq231339 Length=1025 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 820 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 761 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 760 GCCGGTATTTAGCCTTA 744 >seq91336 Length=11174 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||| ||||||||||||| |||||||| || || || |||||||| Sbjct 2378 AAGCCCGTTCCCTTGTCTGTGGTTTCGCTGGATAGTAGGTACGGACAGTGGGAATCTCGT 2319 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||| ||| |||||||| ||||| Sbjct 2318 TCATCCATTCATGCGCATCATTAATTAGACGACGA 2284 >seq72426 Length=9623 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 9405 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 9464 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 9465 GCCGGTATTTAGCCTTA 9481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333516563052260