Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq125977 170 2e-37 seq18550 113 6e-20 seq42668 102 1e-16 seq36452 100 4e-16 seq172906 98.7 1e-15 seq59957 93.3 5e-14 >seq125977 Length=8618 Score = 170 bits (188), Expect = 2e-37 Identities = 194/260 (75%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 32804 ||||| ||||| || ||||| || ||||| ||||| || |||||||| || ||| |||| Sbjct 4826 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAGAGGCC 4767 Query 32805 ATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCC 32861 | || || |||||||| | | | |||| ||||| | ||||| ||||| Sbjct 4766 ACAACTCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACACAGGGCCCAGACGGCC 4707 Query 32862 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTA 32921 |||||||| ||| ||||||||||||| |||||||| |||||||| | | || || | Sbjct 4706 TTCTTTTTCACAGAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAA 4647 Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 ||||||| || || ||||| | || || |||||||| ||||| |||||||| ||||| Sbjct 4646 TCTTTAATGTAAGTGTCAATGAGGAGCCTGTACATTTCAGAATGTATGTTTTCCATGGCA 4587 Query 32982 ATTTGAAATCCGTAGAAGCA 33001 ||||| || || ||||| || Sbjct 4586 ATTTGGAAGCCATAGAAACA 4567 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 |||||| || || || || ||||||| |||||| ||||| ||||| | |||||||||| Sbjct 5044 ACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAA 4985 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 32758 | || || || ||||| || || || || || ||||| ||||| || Sbjct 4984 ATGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGA 4939 >seq18550 Length=27441 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 2463 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 2522 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| ||| ||||| ||||| ||||| ||||| || || | | |||| Sbjct 2523 GACTCATTATTCCCCAGAATCTGAGCGGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2582 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 2583 CTGTTTCTTATACCATA 2599 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||||| ||| |||| | || || ||||| || | || ||||| || ||||||||| Sbjct 14355 CTAGACAGTTGTGGACGGTTGGTCCCGGCATTGAAGAGAGTTGGAGAGGCATGAGTAAAC 14414 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || || |||||||| || |||||||| ||||| || | ||| ||||| || ||||| Sbjct 14415 CACTTCTCAGAAAGCAGGTTGTACGTTTCAATTGCAGCGTCGATATCTTCTTTGTGAATC 14474 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || || | || | ||| ||||| ||||| ||||||||| Sbjct 14475 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 14513 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 19225 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 19284 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | |||||| | || || ||| | || || |||||||| |||| Sbjct 19285 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 19344 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 19345 GTTCCACTGTGGTGACTCCACTGTACAGGCCTTGGATTACTTTCAT 19390 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 8745 CTCCACTCGCTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGATCCCGGGCTCG 8804 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 8805 TTGCTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 8864 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 8865 AGGCTCCAGGTAAATAGC 8882 >seq42668 Length=14146 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 540 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 481 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | ||| || |||||||||||||| || || || || |||||||| || | || |||| Sbjct 480 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCAGCCATCTTGAGAACAGTCT 421 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 420 TCTGAGAGATTTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 370 >seq36452 Length=40126 Score = 100 bits (110), Expect = 4e-16 Identities = 137/191 (72%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 30468 TCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTTACATTG 30527 ||||||||| | || |||| | | || ||||| || || | ||| || | ||||| | Sbjct 26899 TCTGGATAAAAAATTCGTTCACAAATGAGCTGTGCAATCCGATCACCTTTTTTTACTTCA 26840 Query 30528 AATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCTTCGTCT 30587 || | ||||||| |||| || | || || |||||||| ||||||||||||||| Sbjct 26839 AACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAATATTTCCTCTATAATCTTCGTCT 26780 Query 30588 ATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGAGCTATT 30644 || |||||| |||||| ||| || | |||| | || ||||||| | ||||| | Sbjct 26779 ATGACACCGGCTCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCGTGAAGCTACT 26720 Query 30645 CTACCATAGCA 30655 || |||||||| Sbjct 26719 CTTCCATAGCA 26709 >seq172906 Length=2851 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || || || || || | |||||| || || |||||||||||||| ||||| | ||| || Sbjct 1439 TCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 1380 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| || || | |||||||| ||||| ||||||| ||||| || || |||||||| Sbjct 1379 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGC 1321 >seq59957 Length=11192 Score = 93.3 bits (102), Expect = 5e-14 Identities = 168/242 (69%), Gaps = 9/242 (4%) Strand=Plus/Minus Query 164812 TAGAGAATGAGATAGAAAAGCGTATCAGACGACTTCATGTTGTACATTTCTGTGAGAAAA 164871 |||||| ||| ||||| ||| | ||||||| || | ||| | || |||||||||||| Sbjct 2977 TAGAGAGTGAAATAGAGAAGTGCATCAGACAGCTGCTTGTCGGTCACTTCTGTGAGAAAC 2918 Query 164872 AAGAGGATATCAAATACGCATGTAGATTCATCAAGGTATATAAACCTGGGGAGGAGACTA 164931 ||||| | || | ||| |||| | ||||||| || ||| ||| |||| | | Sbjct 2917 AAGAGAAGATGAGGTACACATGCAAATTCATCCCAGTCCATAGACC---GGAGCCGTGTG 2861 Query 164932 CCTCGACATACGTGTGCGCTATCAAAGTGGAAAGATGTTGCTGTGCTGTGTTTACAAATT 164991 | |||| || || || ||| |||||| |||| ||||||||||||||| | Sbjct 2860 C----TCATATGTCTGTGCACTCAGAGTGGAGAGATTCTGCTGTGCTGTGTTTGCTGCAG 2805 Query 164992 GGCCAGAATCATGGTATATGG-ATACTAGTGGTATCAAGAAGTATTCTCCAGATGAATGG 165050 ||| || || ||| | ||| | || || ||| | ||||||| | | |||| |||||| Sbjct 2804 TGCCTGAGTCCTGGCACGTGGAAGACAAG-GGTGTGAAGAAGTTTACCTCAGAGGAATGG 2746 Query 165051 GT 165052 || Sbjct 2745 GT 2744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630856216616000