Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq125977 147 2e-30 seq55738 95.1 1e-14 >seq125977 Length=8618 Score = 147 bits (162), Expect = 2e-30 Identities = 206/289 (71%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 93417 TTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA 93476 ||||||| || |||||||| | || || || | ||| |||||||| ||| | ||||| Sbjct 4496 TTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCACTCTA 4437 Query 93477 CGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAA 93536 | ||||||||||||||||| |||| || ||||| ||||||| | | ||||| Sbjct 4436 CCAGATTTTCATTGACTATGACATCACTCGCCGCAAAGAAAGCCAGGACGTAAGATATAA 4377 Query 93537 AATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTT 93596 ||||| |||| || | ||| || ||||| | | ||| || || || || || | Sbjct 4376 AATGTCTCTCGTCGTGTTTCAGTGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCT 4317 Query 93597 CTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATT 93656 | || ||||||| || || || || ||||| |||||||| | ||| || || || |||| Sbjct 4316 CCTCAGCAGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATT 4257 Query 93657 GAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 ||| ||||| | |||||||| || || ||| | ||||| ||||| Sbjct 4256 CAATGGGAAAGACAACAAAACGGCGGGGATTTTCTCTCAGTAAGGGCTC 4208 Score = 109 bits (120), Expect = 6e-19 Identities = 180/260 (69%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 93176 AGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCC 93235 ||||| |||||||| |||||| ||||| || || || ||||| || || ||| | ||| Sbjct 4826 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAGAGGCC 4767 Query 93236 ACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCT 93295 |||| ||||| || | | || || | ||||| | ||||| |||| Sbjct 4766 ACAACTCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACACAGGGCCCAGACGGCC 4707 Query 93296 TTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAA 93355 || || || | | |||| | ||| || ||||| || || || || || | ||| | ||| Sbjct 4706 TTCTTTTTCACAGAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAA 4647 Query 93356 TCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCA 93415 ||| ||||| || || || | || |||||||||||||| | || ||||| ||| Sbjct 4646 TCTTTAATGTAAGTGTCAATGAGGAGCCTGTACATTTCAGAATGTATGTTTTCCATGGCA 4587 Query 93416 ATTTGGAATCCGTAGAAACA 93435 |||||||| || |||||||| Sbjct 4586 ATTTGGAAGCCATAGAAACA 4567 >seq55738 Length=16555 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 93476 ACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATA 93535 || ||||||||||||||||| ||||| || ||||| || |||| | || |||| Sbjct 6664 ACCAGATTTTCATTGACTATGCCATCACTCGCCGCAAAGAATGCCAGGACGTGAGATATA 6605 Query 93536 AAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACT 93595 |||||| |||| || ||| ||| ||||| | | ||| || || || || || Sbjct 6604 AAATGTCTCTCGTCCGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACC 6545 Query 93596 TCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATAT 93655 || || | ||||| || || || || ||||| |||||||| | ||| || || || ||| Sbjct 6544 TCCTCAGCCGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTAT 6485 Query 93656 TGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 | || ||||| | || || || || || ||| | ||||| ||||| Sbjct 6484 TCGATGGGAAAGACCACGAAGCGGCGGGGATTTTCTCTCAGTAAGGGCTC 6435 Score = 93.3 bits (102), Expect = 5e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 93133 CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGC 93192 ||||||| ||||| | || || | |||||| |||||||||||||| |||||||| || Sbjct 9248 CTCATTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGC 9189 Query 93193 AAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 |||| ||||| || || || ||||| || || ||||| ||||||| ||||| Sbjct 9188 AAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGCCACAACTCGTTC 9135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554421332050400