Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq141308 188 1e-42 seq68848 154 3e-32 seq66926 145 1e-29 seq31296 143 5e-29 seq93163 136 7e-27 seq106596 131 3e-25 seq177860 129 1e-24 seq148632 125 1e-23 seq271237 123 5e-23 seq224230 93.3 8e-14 seq25405 89.7 9e-13 seq165792 86.0 1e-11 seq34598 84.2 4e-11 seq13750 84.2 4e-11 >seq141308 Length=4330 Score = 188 bits (208), Expect = 1e-42 Identities = 173/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||||||||||| |||||||| || ||||| || || | Sbjct 4282 AGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGG 4223 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || || ||||||||| Sbjct 4222 CCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCC 4163 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||||||| |||||||||||| | || || |||| |||| Sbjct 4162 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTG 4103 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || || || |||||||| ||||| ||||||||| Sbjct 4102 ATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATT 4064 >seq68848 Length=10048 Score = 154 bits (170), Expect = 3e-32 Identities = 171/227 (75%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| | |||||||||||| ||||||| || ||||| Sbjct 7266 CCGCCACGCAGACGAAGCACCAAGTGCAAAGTGGACTCTTTT-GGATGTTGTAGTCGGAC 7324 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || |||| |||| | | |||||| || || ||||| || || || ||||| ||||| Sbjct 7325 AGGGTCCAGTCATCCTACAGCTGCTTGCCTGCAAATATCAGCCTCTGCTGGTCAGGTGGG 7384 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| |||| |||||||| |||||||||||| | | || Sbjct 7385 ATGCCTTCCTTGTCTTGGATCTCGGCCTTGACATTCTCGATGGTGTCACTGGGCTTGACC 7444 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||| | |||||||| || || |||||||| Sbjct 7445 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 7491 >seq66926 Length=10282 Score = 145 bits (160), Expect = 1e-29 Identities = 127/158 (80%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || ||||||||||| |||||||| || ||||| || || | Sbjct 10116 AGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGG 10175 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || || ||||||||| Sbjct 10176 CCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCC 10235 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 ||||| || ||||| ||||||||| |||||||||||| Sbjct 10236 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC 10273 >seq31296 Length=16870 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| |||| || || |||||||| ||||||||||| || || | Sbjct 14446 CCACCACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGC 14505 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| || | ||| || || || || || || || ||| Sbjct 14506 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGA 14565 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || | ||||| |||||||| || || ||||||| | || || Sbjct 14566 ATTCCTTCCTTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACC 14625 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| || || |||||||| ||||| |||||||| Sbjct 14626 TCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 14672 >seq93163 Length=7565 Score = 136 bits (150), Expect = 7e-27 Identities = 160/216 (74%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||| | ||||| ||||| || |||||||| Sbjct 7026 ACCAGGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCAGAGAGAGTGTGGCCATCTTCC 7085 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAA---TGCCTTCCTTGTCT 68369 | |||||| || | || |||||| || |||||| | || | |||| || ||||| Sbjct 7086 AGCTGCTTGCCCACAAAGATGAGTGGCTGCTGGTCGCGGGGCAGGGTGCCCTCTTTGTCC 7145 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 || ||||| ||||| || ||| |||||||| | || || |||| ||||||||| Sbjct 7146 TGGATCTTGGCCTTAACATTCTCTATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 7205 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || || |||||||| ||||| || |||||| || Sbjct 7206 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 7241 >seq106596 Length=6504 Score = 131 bits (144), Expect = 3e-25 Identities = 155/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| | | || ||||||||||| ||||| || || || || || || | ||||||| Sbjct 5533 ACCAGGAGCAGGGTGGACTCTTTCTGGATCTTGTAGTCAGACAGGGTGCAGACATCTTCC 5474 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || || || || ||||| || |||||||| | |||||||| Sbjct 5473 AGCTGCTTGCCTGCAAAGATTCC-CTCTGCTGGTCAGGGGGAATGCCCTTTTTGTCTTGG 5415 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||||||||||| ||| || |||||| | ||| || |||| ||||||||| || Sbjct 5414 ATCTTTGCCTTGACCTTCTCAATAGTGTCTCTGGGTTCAACCTCCAGGGTGATGGTCTTG 5355 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||||| | || |||||||| Sbjct 5354 CCTGTCAGGGTCTGCATAAAGATCTGCAT 5326 >seq177860 Length=2647 Score = 129 bits (142), Expect = 1e-24 Identities = 163/222 (73%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGT--GT 68299 |||| | ||| |||| || || |||||||| ||||||||||| || || || | | || Sbjct 2584 GAAGTCTCAACACCAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACACTAAGT 2525 Query 68300 CCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCC 68359 |||||||| | |||||| || ||||| || || || | || || || |||| || Sbjct 2524 ATGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTCCTGATCAGGAAGAATTCC 2465 Query 68360 TTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAA 68419 | |||| || || ||||| |||||||| || |||||||| | ||| || | | Sbjct 2464 T-CCTTATCCTGGATCTTGGCCTTGACATTTTCTATGGTGTCCAAGGGTTCAACCTTGAG 2406 Query 68420 GGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| ||||| |||||||| ||||| |||||||| Sbjct 2405 TGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 2364 >seq148632 Length=3950 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| |||| || || ||||||| ||||||||||| || || || Sbjct 377 CCACCACGAAGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGAC 318 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || ||||||| | |||||| || || || || || | || || || || || Sbjct 317 AAAGTATGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGACGA 258 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| |||||||| || || ||||||| | ||| || Sbjct 257 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCAACC 198 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||| ||| | |||||||| | ||| |||||||| Sbjct 197 TCGAGCATGATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTGCAT 151 >seq271237 Length=352 Score = 123 bits (136), Expect = 5e-23 Identities = 166/232 (72%), Gaps = 13/232 (6%) Strand=Plus/Plus Query 68241 CGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTC 68300 ||||| | ||| |||| || || |||||||| ||||||||||| || || || | || Sbjct 3 CGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 62 Query 68301 CTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360 | |||||||| | |||||| || || || || || || || || || || ||||| ||| Sbjct 63 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCT 122 Query 68361 TCCTTGTCTTGAATCTTTGCCTTGAC-----------GGCCTCGATGGTGTCTGCTGATT 68409 ||||| || || ||||| |||||||| | | | | ||||| | | || Sbjct 123 TCCTTATCCTGGATCTTGGCCTTGACATTTTTTTTCTGTCAT--TTAGTGTCCGAGGGTT 180 Query 68410 CTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || | ||||||||||| ||||| |||||||| || || |||||||| Sbjct 181 CAACCTCAAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACTAAAATCTGCAT 232 >seq224230 Length=2161 Score = 93.3 bits (102), Expect = 8e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||| |||| |||||| | ||||||||||| || | |||||||| Sbjct 1681 ACCAGGTGCAGGGTGGACCCTTTCTGGATGGTGTAATCGGAGAGAGTGCGGCCATCTTCC 1740 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 | |||||| || || || ||||||| || ||||| || || ||||| || || || Sbjct 1741 ACCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTATC 1796 >seq25405 Length=23031 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||||||||| ||||| |||||||| |||||||||||| | || || || Sbjct 16450 CCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCA 16391 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| || ||||| |||||||| || || |||||||| Sbjct 16390 AGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 16347 >seq165792 Length=3985 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 84451 AGAGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 84510 ||||||||||| |||||||||||| ||||| || ||||||| || ||||||||||| Sbjct 495 AGAGCGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTT 436 Query 84511 CGAGCCCCACATCGGGC 84527 |||||||||| | |||| Sbjct 435 CGAGCCCCACGTTGGGC 419 >seq34598 Length=32462 Score = 84.2 bits (92), Expect = 4e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| | ||||||||||| |||||||| || | ||| || ||| ||||| || Sbjct 8302 ACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTTGGACAGGGTCTGGCCATCCTCC 8243 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 | |||||| ||||| ||||| || || || ||||| ||| | ||||||| Sbjct 8242 AGCTGCTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTAGGATGCCTT 8194 >seq13750 Length=24615 Score = 84.2 bits (92), Expect = 4e-11 Identities = 149/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| || || ||||| ||||| |||||||| || | || || | ||||||| Sbjct 22252 ACCAGGTACAGGGTGGATTCTTTCTGGATGTTGTATTTAGAAAGAGCGTGGCCATCTTGC 22311 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAA-TGCCTTCCTTGTCTTG 68371 | |||||| | | || ||| || || |||| || ||| |||| || ||||| | Sbjct 22312 AGCTGCTTGTCCTCCAAGATGGGTTGCTGCTGGTGTGGGGGAGGTGCCCTCTTTGTCCTA 22371 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 ||||| | |||||| |||||||||||| | || || | || ||||||||| || Sbjct 22372 GATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTTCAGGGTGATGGTCTT 22431 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467 | || | |||||| ||||| || ||| || |||| Sbjct 22432 GCTGGTCAAGGTCTTCACGAAGATTTGCGTTTTGCT 22467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917585002671200