Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq31296 100 2e-16 seq271237 89.7 4e-13 >seq31296 Length=16870 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | || || || ||||| |||||||| || Sbjct 14445 ACCACCACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGG 14504 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| || || || |||| | |||| || | ||| || || ||||| Sbjct 14505 CAAAGTACGGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGG 14564 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| || | | ||| | ||||| | || || || Sbjct 14565 AATTCCTTCCTTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAAC 14624 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||||| || || || || || || ||||||||||| Sbjct 14625 CTCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 14672 >seq271237 Length=352 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 9/232 (4%) Strand=Plus/Plus Query 114160 CACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAG 114219 |||| |||||||| || | ||| | || || || ||||| |||||||| || || || Sbjct 1 CACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAG 60 Query 114220 TACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGC 114279 |||| |||||| || || || ||||| |||| || | ||| || || |||||||| | Sbjct 61 TACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTC 120 Query 114280 CTTCTTTGTCGGCAATCTT----TTG-----TTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 |||| || || ||||| ||| |||| |||| ||||| | || || Sbjct 121 CTTCCTTATCCTGGATCTTGGCCTTGACATTTTTTTTCTGTCATTTAGTGTCCGAGGGTT 180 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || | || | ||||| || || || || || || ||||||||||| Sbjct 181 CAACCTCAAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACTAAAATCTGCAT 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418339908821520