Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq31296 131 4e-25 seq148632 104 5e-17 seq177860 96.9 8e-15 seq224230 84.2 5e-11 >seq31296 Length=16870 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || |||||||| || ||||| | Sbjct 14446 CCACCACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGC 14505 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | || || || | ||||||||| | ||| ||| | || Sbjct 14506 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGA 14565 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| |||||| |||| || || || || |||||||||| || | || || Sbjct 14566 ATTCCTTCCTTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACC 14625 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||| || || ||||| ||||| |||||||| Sbjct 14626 TCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 14672 >seq148632 Length=3950 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || |||||||| || ||||| | Sbjct 377 CCACCACGAAGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGAC 318 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | | ||||| | || || || || |||||||| ||| ||| | | Sbjct 317 AAAGTATGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGACGA 258 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||||| || | ||| || Sbjct 257 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCAACC 198 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| |||| || ||||| | || ||||| | ||| |||||||| Sbjct 197 TCGAGCATGATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTGCAT 151 >seq177860 Length=2647 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| ||| || |||||||| || ||||| | Sbjct 2591 CCACCATGAAGTCTCAACACCAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGAC 2532 Query 288307 AGC--GTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTG 288364 | || | || ||||| | || || || ||||||||||| | || ||| | Sbjct 2531 ACTAAGTATGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTCCTGATCAGGAA 2472 Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 | |||||| ||| ||||||||| || || || || |||||||| | || | ||| | Sbjct 2471 GAATTCCTCCTT-ATCCTGGATCTTGGCCTTGACATTTTCTATGGTGTCCAAGGGTTCAA 2413 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | | ||| ||||| || ||||| || || ||||| ||||| |||||||| Sbjct 2412 CCTTGAGTGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 2364 >seq224230 Length=2161 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || |||||||||||||| || || ||||| || | || | || || | ||| Sbjct 1868 GGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTTGATGGTGTCACTGGGTTCC 1927 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || ||||| ||||| | |||||| ||||| ||||| || |||||| || Sbjct 1928 ACCTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCACGAAGATTTGCATTTTG 1981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1174357434711880