Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq93163 100 3e-16 seq76403 93.3 5e-14 seq74010 93.3 5e-14 seq72569 93.3 5e-14 seq31296 91.5 2e-13 seq26116 91.5 2e-13 seq172575 89.7 6e-13 seq43284 89.7 6e-13 seq20732 89.7 6e-13 seq94415 82.4 8e-11 >seq93163 Length=7565 Score = 100 bits (110), Expect = 3e-16 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | ||| | |||| |||| ||| ||| || || || ||||||||| Sbjct 7009 CCTCC-CTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCAGAG 7067 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| | | || || |||||||| || | || |||||| ||||||||||| ||| Sbjct 7068 AGAGTGTGGCCATCTTCCAGCTGCTTGCCCACAAAGATGAGTGGCTGCTGGTCGCGGGGC 7127 Query 42102 ACGCT---CTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCC 42158 | | | ||| |||||| ||| || || | || | | ||||| || | ||| Sbjct 7128 AGGGTGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTCTCTATGGTGTCACTGGGCTCC 7187 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || || | |||||||| ||||| || || ||||| || |||||||||||||| || Sbjct 7188 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTGAC 7243 >seq76403 Length=9468 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 383 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 324 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 323 ATACTAACGAGGAT 310 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2871 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2812 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 2811 TACTAACGAGGA 2800 >seq74010 Length=9436 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 3322 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 3263 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 3262 TATACTAACGAGGA 3249 >seq72569 Length=9607 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 6211 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 6152 Query 57066 ATACTACCGAGGAT 57079 |||||| ||||||| Sbjct 6151 ATACTAACGAGGAT 6138 >seq31296 Length=16870 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||||| ||| | ||| ||||||||| || ||||| |||| || ||| || | || Sbjct 14460 CAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGTACGGCCATC 14519 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 || |||||||| |||| ||| || || | |||||| || | || | | ||||| || Sbjct 14520 TTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 14579 Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175 | ||| || |||| | | | ||||| | || || |||| ||||||||| Sbjct 14580 CCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACCTCGAGCGTGATGGT 14639 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || || ||||| || || || ||||| Sbjct 14640 TTTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 14672 >seq26116 Length=18511 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 10457 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 10516 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 10517 ATACTAACGAGGA 10529 >seq172575 Length=2865 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1533 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1474 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1473 TACTAACGAGGA 1462 >seq43284 Length=14024 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 10963 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 11022 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 11023 TACTAACGAGGA 11034 >seq20732 Length=20618 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3728 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3669 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 3668 TACTAACGAGGA 3657 >seq94415 Length=9420 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 2945 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 2886 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 2885 ATACTAACGAGGA 2873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540833120526400