Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq93163 113 4e-20 seq141308 109 5e-19 seq271237 95.1 1e-14 seq68848 91.5 1e-13 seq31296 91.5 1e-13 seq66926 82.4 8e-11 >seq93163 Length=7565 Score = 113 bits (124), Expect = 4e-20 Identities = 147/203 (72%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||| ||||||| | || ||| | | ||||| ||||||||||| Sbjct 7038 GTGGACTCTTTCTGGATGCTGTAATCAGAGAGAGTGTGGCCATCTTCCAGCTGCTTGCCC 7097 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAA---TTCCTTCTTTTTCTTGTATTTTTTGC 64363 || | ||||| ||||||||||| | || | | || ||||| || || || || | Sbjct 7098 ACAAAGATGAGTGGCTGCTGGTCGCGGGGCAGGGTGCCCTCTTTGTCCTGGATCTTGGCC 7157 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || ||| ||| | || |||| || ||||| || | || | |||||||||||||| Sbjct 7158 TTAACATTCTCTATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGG 7217 Query 64424 GTTTTTACGAAAATTTGCATTTT 64446 || || ||||| ||||||||||| Sbjct 7218 GTCTTCACGAAGATTTGCATTTT 7240 >seq141308 Length=4330 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | |||||| | ||||| ||||||||||| Sbjct 4261 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 4202 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || ||||| || || || || || ||| Sbjct 4201 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 4142 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || || || || | || | ||||||||| |||| || Sbjct 4141 ACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTC 4082 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||| || |||||| Sbjct 4081 TTCACGAAGATCTGCATT 4064 >seq271237 Length=352 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || || ||||| |||||||| || | | || || | Sbjct 8 TCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCC 67 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| ||||||||||| ||| | || |||| |||||| || |||||||||||||| || Sbjct 68 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTT 127 Query 64348 TTCTTGTATTTT 64359 || || || || Sbjct 128 ATCCTGGATCTT 139 >seq68848 Length=10048 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | |||||| | || | || || |||||| || ||||||| || | Sbjct 7266 CCGCCACGCAGACGAAGCACCAAGTGCAAAGTGGACTCTTTTGGA-TGTTGTAGTCGGAC 7324 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| | | || | ||||||||||| ||| | || |||| ||||||||| || || Sbjct 7325 AGGGTCCAGTCATCCTACAGCTGCTTGCCTGCAAATATCAGCCTCTGCTGGTCAGGTGGG 7384 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| || | ||| ||| ||| | || |||| || | || Sbjct 7385 ATGCCTTCCTTGTCTTGGATCTCGGCCTTGACATTCTCGATGGTGTCACTGGGCTTGACC 7444 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | ||||||||| ||| || || || || || ||||| || Sbjct 7445 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 7494 >seq31296 Length=16870 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || ||||| |||||||| || | Sbjct 14445 ACCACCACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGG 14504 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| ||||||||||| | | || |||| |||||| || ||||| Sbjct 14505 CAAAGTACGGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGG 14564 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || || | || || ||| ||| || | || || || || || Sbjct 14565 AATTCCTTCCTTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAAC 14624 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || || || | || || |||||||| ||||| Sbjct 14625 CTCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 14672 >seq66926 Length=10282 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | |||||| | ||||| ||||||||||| Sbjct 10137 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCT 10196 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | || |||| ||||||||| || || || ||||| || || || || || Sbjct 10197 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTT 10249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497455981042400