Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq31296 87.8 2e-12 >seq31296 Length=16870 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || | ||| | | | ||||||||||| ||||||||||| || |||||| || Sbjct 14460 CAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGTACGGCCATC 14519 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || || || || || | |||| || | ||| || || ||||| || ||||| || || Sbjct 14520 TTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 14579 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || || | | ||| | ||||| | | ||| ||||||| ||| | || Sbjct 14580 CCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACCTCGAGCGTGATGGT 14639 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || || || || || ||||||||||| Sbjct 14640 TTTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 14672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494088398491200