Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq31296 82.4 7e-11 >seq31296 Length=16870 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || |||||||| ||||| || || || ||||||||||| || || || Sbjct 14446 CCACCACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGC 14505 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| |||| || || || | | | |||| | ||||| || || ||| Sbjct 14506 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGA 14565 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| ||||| | || || |||| ||||| ||||| || | ||| || Sbjct 14566 ATTCCTTCCTTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACC 14625 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | ||||| || || || || || || ||||| |||||| Sbjct 14626 TCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTGCATC 14673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450023086981600