Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq26677 167 3e-36 >seq26677 Length=18315 Score = 167 bits (184), Expect = 3e-36 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| ||| ||||| |||||||||| || || || | || Sbjct 12054 AAGGGACAGCCCTTCACATTCTTACAGATGAGAGACTGAATGGAGGCAGTGTTGATAATC 11995 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || || ||||| || ||||||||| || || |||||| Sbjct 11994 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGAGGAGAACAGATGGGA 11935 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| |||| || ||| Sbjct 11934 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 11875 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | ||||| || ||||| || | | | ||| ||| || || | || || | | Sbjct 11874 ATAGCATCTGGACGTGGCTTTTCCACCAGCAGGGCAGGGTACAGCTCCATGGCATCAATG 11815 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||||||||||||||||| || || || |||||||| ||| Sbjct 11814 TCACTGTAGAGGGCTTCCAACTCTGCGGCCATTTCCTTCTCTCCT 11770 Score = 149 bits (164), Expect = 9e-31 Identities = 210/293 (72%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || || |||||||| ||||| || || || || |||| | |||||||| |||||| Sbjct 11002 CCGGCCAGCGATCTGTCTGGTGAATGACTCGACAAAGTGGGTGAGTCCGTGCTCGATGAG 10943 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| ||||||| | ||| || | ||||| |||| | ||| | || | || Sbjct 10942 GATGGAGTTGTTGTGGAGGAACTGCTTGTAACTGTACTCCTGGTCTTCGATCTGGAAGCT 10883 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||||||| ||| | |||||| | || || || ||||| || || || || |||||||| Sbjct 10882 GTCAGGCAGCAGGGGGTGCCAGTGATACAGTGTGTTGAATTCCGCTGCGATGCGGTTCTG 10823 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||||| || | ||| |||||| | ||||||||| || | || | ||||||||| Sbjct 10822 ATACTGGAACTGCTGGT--TGAACAGCAGCTCCGGGTCGAACTTGAGTTTGAAGTGGTAG 10765 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 || || || ||||| || || | | ||| | ||| || || || ||||| || Sbjct 10764 CCACTCAGGTGCTGCACGTAGTCTTCGATCACAATCTTGATAGTCTCCCCTGT 10712 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| ||||| | ||||||||| | ||| ||| | || Sbjct 9191 TCTTACCCCATGGCCCAGTCCTTGGGTGAACCCAGGTCCTCGCTTCTGATCTGTCTTGAA 9132 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | ||||| || ||||||| || | ||| || ||||| Sbjct 9131 AAACTGATGAGTGAAGTGCTGGGCAAAAAATGCAAACATCATATTCGAGCCTTGAGGATC 9072 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | |||| | || ||||||||||| || | | |||| || || || Sbjct 9071 AGGAATGAACTTTCTCCTTAGAAGAACTTTGTCCAGAACTTCTTTTGAGTCAGGAAG 9015 Score = 89.7 bits (98), Expect = 7e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 10388 CACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTAT 10447 |||||||||| || | ||||| |||||||| | || ||||| || | ||| || | Sbjct 8451 CACCTTTCACACCCATGGGAGTCGGGCAGTCGTCGGCTACAGGAGGAAGTGCTCTGGTGT 8392 Query 10448 AATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCG 10507 | ||||| || || || || ||||||||| | ||||| ||||| | | |||||| | Sbjct 8391 AGTAGGAGAGGTTGGAGAAGGCTTCCCAGTTTTTGTAACCATAGTGCACGTTGTAAGTTG 8332 Query 10508 GGGGACTGTCAATCATCTCGGACCTGGCT 10536 | ||||||||||||| | || |||||| Sbjct 8331 GCGGACTGTCAATCAAATGTGATCTGGCT 8303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720557528564000