Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq31296 145 2e-29 seq177860 132 1e-25 seq271237 129 1e-24 seq148632 127 5e-24 seq141308 122 2e-22 seq93163 102 2e-16 seq66926 100 7e-16 seq43854 93.3 1e-13 seq17604 89.7 1e-12 seq106596 86.0 1e-11 >seq31296 Length=16870 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || || || || || ||||||||||||| ||||||||||| |||||| Sbjct 14452 CGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGTA 14511 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || | |||||| || | |||||| || ||| ||||||| Sbjct 14512 CGGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCT 14571 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||| | ||||| ||| || ||| | ||||||| | || || || | | Sbjct 14572 TCCTTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACCTCGAGC 14631 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || || ||||| ||||| || Sbjct 14632 GTGATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTG 14669 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||| | || |||||| |||||||||| | |||||| | || |||||| |||| Sbjct 14546 CTGATCTTCCCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGCCTGACTACAACATCCAA 14487 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || ||||| || ||||| || || ||||||||||| Sbjct 14486 AAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCG 14452 >seq177860 Length=2647 Score = 132 bits (146), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCA--AAGT 199467 ||||||||| || || || || || ||||||||||||| ||||||||||| || |||| Sbjct 2584 GAAGTCTCAACACCAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACACTAAGT 2525 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||||||||||||||||| || |||||||| || | || ||| || |||| |||||| Sbjct 2524 ATGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTCCTGATCAGGAAGAATTCC 2465 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 | || ||||| ||||| ||| || ||| | |||||| | ||| || | | Sbjct 2464 TCCT-TATCCTGGATCTTGGCCTTGACATTTTCTATGGTGTCCAAGGGTTCAACCTTGAG 2406 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||| || || ||||| ||||| || Sbjct 2405 TGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTG 2367 >seq271237 Length=352 Score = 129 bits (142), Expect = 1e-24 Identities = 165/227 (73%), Gaps = 9/227 (4%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || || || || || ||||||||||||| ||||||||||| |||||| Sbjct 3 CGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 62 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || || ||||| || | |||||| || ||| ||||||| Sbjct 63 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCT 122 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATT-----CGAC----GGTGTCTGTTGTTTCT 199579 || ||||| ||||| ||| || || | | ||||| | | ||| Sbjct 123 TCCTTATCCTGGATCTTGGCCTTGACATTTTTTTTCTGTCATTTAGTGTCCGAGGGTTCA 182 Query 199580 ACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || | |||||| || || ||||| || || ||||| ||||| || Sbjct 183 ACCTCAAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACTAAAATCTG 229 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| || || |||||| |||||||||| | |||||| | || |||||| |||| Sbjct 97 CTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACATCCAA 38 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || ||||| || ||||| || || ||||||||||| Sbjct 37 AAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCG 3 >seq148632 Length=3950 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || || || || | ||||||||||||| ||||||||||| |||||| Sbjct 371 CGAAGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 312 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||||||||||| || || ||||| || |||||| || ||| ||||||| Sbjct 311 TGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGACGAATTCCT 252 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| | ||||||| | ||| || || | | Sbjct 251 TCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGC 192 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || || ||| | || || |||| ||||| || Sbjct 191 ATGATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTG 154 >seq141308 Length=4330 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || ||||| || |||| ||||||||| | || || | ||||| Sbjct 4277 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 4218 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || || ||||| || Sbjct 4217 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 4158 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| |||| |||||| | | || || |||| ||||| || Sbjct 4157 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGT 4098 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || ||||| || || || Sbjct 4097 CTTGCCTGTCAGGGTCTTCACGAAGATCTG 4068 >seq93163 Length=7565 Score = 102 bits (112), Expect = 2e-16 Identities = 173/247 (70%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||| || |||| | |||| |||| | ||| |||||| Sbjct 7023 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCAGAGAGAGTGTGGCCATCT 7082 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTC---CGGAAAAATTCCTTCTCGC 199534 ||||||||||| || | |||||||| |||||||||| || | | || ||| Sbjct 7083 TCCAGCTGCTTGCCCACAAAGATGAGTGGCTGCTGGTCGCGGGGCAGGGTGCCCTCTTTG 7142 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 ||||| ||||| ||| || || | |||||| | | || || |||| ||||| Sbjct 7143 TCCTGGATCTTGGCCTTAACATTCTCTATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 7202 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGCCTTACTTTACGTATTT 199654 ||||| || || || || ||||| || ||||| |||||| | ||| |||||| || | Sbjct 7203 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTG---CATTTT-GACTT-GTTTACGAATGT 7257 Query 199655 CTTAAAA 199661 ||||| Sbjct 7258 GATAAAA 7264 >seq66926 Length=10282 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || ||||| || |||| ||||||||| | || || | ||||| Sbjct 10121 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 10180 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || || ||||| || Sbjct 10181 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 10240 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 ||| ||||| ||| ||| |||| |||||| Sbjct 10241 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTC 10273 >seq43854 Length=13911 Score = 93.3 bits (102), Expect = 1e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||||||||||| ||| || | ||||||||||||||||| || ||||||| Sbjct 3383 CCTTTTGGATGTTGTAGTCAGACAATGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGA 3324 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || | |||||| || ||| ||||||| Sbjct 3323 TCAGCCTCTGCTGATCAGGAGGAATTCCT 3295 >seq17604 Length=44301 Score = 89.7 bits (98), Expect = 1e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| || || || || | ||||||||||||| ||||||||||| |||||| Sbjct 18808 GAAGTCTCAACACCAGATGAAGGGCAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTAT 18749 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAG 199503 ||||||||||||||||| || || ||||| || Sbjct 18748 GGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAG 18715 >seq106596 Length=6504 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||| | || || ||||| || |||| |||||||||| || || | ||||| Sbjct 5536 AGAACCAGGAGCAGGGTGGACTCTTTCTGGATCTTGTAGTCAGACAGGGTGCAGACATCT 5477 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| | ||||||||| || ||| || | | || Sbjct 5476 TCCAGCTGCTTGCCTGCAAAGAT-TCCCTCTGCTGGTCAGGGGGAATGCCCTTTTTGTCT 5418 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| || || | |||||| | | ||| || |||| ||||| ||| Sbjct 5417 TGGATCTTTGCCTTGACCTTCTCAATAGTGTCTCTGGGTTCAACCTCCAGGGTGATGGTC 5358 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || | || ||| || || Sbjct 5357 TTGCCTGTCAGGGTCTGCATAAAGATCTG 5329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1173627925180820