Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq141308 129 7e-25 seq68848 113 5e-20 seq93163 111 2e-19 seq106596 95.1 1e-14 seq31296 91.5 2e-13 seq66926 89.7 6e-13 seq177860 84.2 2e-11 >seq141308 Length=4330 Score = 129 bits (142), Expect = 7e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || ||| || ||||| ||||||||||| || ||||| | Sbjct 4279 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 4220 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | ||||||||| | || | || |||||| Sbjct 4219 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTG 4160 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | ||||| || | || || |||| |||||| Sbjct 4159 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATG 4100 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || ||||| ||||| || || || ||||| |||||| Sbjct 4099 GTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATT 4064 >seq68848 Length=10048 Score = 113 bits (124), Expect = 5e-20 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||| | ||||| ||||| || ||| |||||||| |||||||||| Sbjct 7264 TGCCGCCACGCAGACGAAGCACCAAGTGCAAAGTGGACTC-TTTTGGATGTTGTAGTCGG 7322 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || | || || | ||||||||||| || ||||||| | ||||||||| | | Sbjct 7323 ACAGGGTCCAGTCATCCTACAGCTGCTTGCCTGCAAATATCAGCCTCTGCTGGTCAGGTG 7382 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||| ||||| ||||| || | | ||||| || | | | Sbjct 7383 GGATGCCTTCCTTGTCTTGGATCTCGGCCTTGACATTCTCGATGGTGTCACTGGGCTTGA 7442 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 | || | |||||||| |||||| |||| || || |||||||| ||||| || Sbjct 7443 CCTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 7494 >seq93163 Length=7565 Score = 111 bits (122), Expect = 2e-19 Identities = 166/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | ||| | ||||| |||| || ||| || ||||| |||| || || Sbjct 7009 CCTCC-CTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCAGAG 7067 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||| | | || || ||||||||||| | || || | ||||||||||| ||| Sbjct 7068 AGAGTGTGGCCATCTTCCAGCTGCTTGCCCACAAAGATGAGTGGCTGCTGGTCGCGGGGC 7127 Query 46487 ACGCT---CTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 | | | ||| |||||| |||||| ||| | || | | ||||| || | ||| Sbjct 7128 AGGGTGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTCTCTATGGTGTCACTGGGCTCC 7187 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || |||| |||||||| ||||| ||||| || || || ||||||||||||||| Sbjct 7188 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 7241 >seq106596 Length=6504 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||| || || |||| | || || ||||||||||| || || Sbjct 5516 CTCTTTCTGGATCTTGTAGTCAGACAGGGTGCAGACATCTTCCAGCTGCTTGCCTGCAAA 5457 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||| | || | || || ||||| |||||| ||||| | | Sbjct 5456 GAT-TCCCTCTGCTGGTCAGGGGGAATGCCCTTTTTGTCTTGGATCTTTGCCTTGACCTT 5398 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | ||| || |||| |||||||| ||||| ||||| || | | Sbjct 5397 CTCAATAGTGTCTCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTGCAT 5338 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 5337 AAAGATCTGCAT 5326 >seq31296 Length=16870 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||||||||| | || |||||||||||| |||||||| | | ||| || | || Sbjct 14460 CAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGTACGGCCATC 14519 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || ||||||||||| | ||| |||| | |||||| || | || | | ||||| || Sbjct 14520 TTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 14579 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| ||||| | | | ||||| | || || || | ||||||||| Sbjct 14580 CCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACCTCGAGCGTGATGGT 14639 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || || || || || || || ||||| Sbjct 14640 TTTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 14672 >seq66926 Length=10282 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || ||| || ||||| ||||||||||| || ||||| | Sbjct 10119 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 10178 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | ||||||||| | || | || |||||| Sbjct 10179 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTG 10238 Query 46499 TCCATGATCTTCTTCTTGA 46517 ||| |||||| ||||| Sbjct 10239 TCCTGGATCTTGGCCTTGA 10257 >seq177860 Length=2647 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATA--GAGTGCGCTCG 46438 |||||||||||| | ||| |||||||||||| |||||||| || | ||| | | Sbjct 2577 CAACACCAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACACTAAGTATGGCCA 2518 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| | || ||| || | | | | |||||| Sbjct 2517 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTCCTGATCAGGAAGAATTC-CTCCTTA 2459 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| | | | ||||| | ||| || | | |||||| Sbjct 2458 TCCTGGATCTTGGCCTTGACATTTTCTATGGTGTCCAAGGGTTCAACCTTGAGTGTGATG 2399 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| ||||| || || || || || || ||||| Sbjct 2398 GTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 2364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562762231879200