Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq125977 163 3e-35 seq55738 140 3e-28 seq141308 127 2e-24 seq93163 111 2e-19 seq68848 102 8e-17 seq31296 100 3e-16 seq66926 87.8 2e-12 >seq125977 Length=8618 Score = 163 bits (180), Expect = 3e-35 Identities = 205/276 (74%), Gaps = 4/276 (1%) Strand=Plus/Minus Query 133220 TTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA-CGCTCG 133278 |||| ||||| || || || || ||||| ||||| |||||||| || ||| | ||| Sbjct 4496 TTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTG-GCTAAAGCACTCT 4438 Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||||||||| ||||| ||| | || || || || || || ||||| |||| || Sbjct 4437 ACCAGATTTTCATTGACTATGACATCACTCGCCGCAAAGAAAGCCAGGACGTAAGATATA 4378 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCT-CCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 ||||| | ||||| || |||| | ||| |||||| | | |||||||| |||||||| Sbjct 4377 AAATGTCTCTCGTCGTGTTTCA-GTGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCAC 4319 Query 133398 CTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATA 133457 |||||| | ||||| || || ||||||||||| |||||||| ||| || || || Sbjct 4318 CTCCTCAGCAGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTA 4259 Query 133458 TTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 || |||||||| | ||||| |||||||| ||||| Sbjct 4258 TTCAATGGGAAAGACAACAAAACGGCGGGGATTTTC 4223 >seq55738 Length=16555 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||||||||| ||||| ||||| || || || || || || ||||| ||||| || Sbjct 6664 ACCAGATTTTCATTGACTATGCCATCACTCGCCGCAAAGAATGCCAGGACGTGAGATATA 6605 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCT-CCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 ||||| | ||||| |||| ||||| |||||| | | |||||||| |||||||| Sbjct 6604 AAATGTCTCTCGTCCGGTTTCA-GCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCAC 6546 Query 133398 CTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATA 133457 |||||| | ||||| || || ||||||||||| |||||||| ||| || || || Sbjct 6545 CTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTA 6486 Query 133458 TTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 || |||||||| | ||| || |||||||| ||||| Sbjct 6485 TTCGATGGGAAAGACCACGAAGCGGCGGGGATTTTC 6450 >seq141308 Length=4330 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || ||||| ||||||||| | || |||||| ||| Sbjct 4064 AATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 4123 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| ||||| || || || ||| | |||| Sbjct 4124 TGACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACC 4182 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| || | || ||||| |||||||| || | |||||||| |||||||| Sbjct 4183 AGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACA 4242 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| || || | || ||||| |||| ||||| Sbjct 4243 ACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCG 4279 >seq93163 Length=7565 Score = 111 bits (122), Expect = 2e-19 Identities = 158/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 7240 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 7181 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAA---TTCCCGCC 38357 | |||| | | | | |||| | || |||| ||||||||||| | | ||| | Sbjct 7180 AGTGACACCATAGAGAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCACCCTGCCCCGC 7121 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 ||||| |||| ||||| | | |||||| |||||||| || | | ||| ||| || Sbjct 7120 GACCAGCAGCCACTCATCTTTGTGGGCAAGCAGCTGGAAGATGGCCACACTCTCTCTGAT 7061 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||| |||||| || || | || ||||| |||| || ||| Sbjct 7060 TACAGCATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGT 7019 >seq68848 Length=10048 Score = 102 bits (112), Expect = 8e-17 Identities = 162/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || | |||||| |||||||| | || ||| || || Sbjct 7494 AACATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCAAGCCC 7435 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | | |||| ||||| || || || || | ||| Sbjct 7434 AGTGACACCATCGAGAATGTCAAGGCCGAGATCCAAGACAAGGAAGGCATCCCACCTGAC 7375 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||| | || || | ||||| ||||||| Sbjct 7374 CAGCAGAGGCTGATATTTGCAGGCAAGCAGCTGTAGGATGACTGGACCCTGTCCGACTAC 7315 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||| || | || |||| |||||||| ||| || | |||||| Sbjct 7314 AACATCCAAAA-GAGTCCACTTTGCACTTGGTGCTTCGTCTGCGTGGCGGC 7265 >seq31296 Length=16870 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || ||||||||||| |||| || ||| || | Sbjct 14672 ATGCAGATTTTCGTGAAGACCCTTACAGGGAAAACCATCACGCTCGAGGTTGAGCCCTCA 14613 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | || |||| || || || |||||||| | || || Sbjct 14612 GACACTATAGAAAATGTCAAGGCCAAGATCCGGGATAAGGAAGGAATTCCTCCTGATCAG 14553 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | | | ||||| |||||||| || | || || | ||||||||| Sbjct 14552 CAGAGGCTGATCTTCCCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGCCTGACTACAAC 14493 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||||||||||| | || || ||| ||||| || Sbjct 14492 ATCCAAAAGGAGTCCACCCTTCATCTGGTGTTG 14460 >seq66926 Length=10282 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| || || || ||| | ||||| ||| |||| || | || ||||| Sbjct 10249 AAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCAGGCAAG 10190 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | |||||||| ||||||||||||||| || || | || ||||| Sbjct 10189 CAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTGCAC 10130 Query 38448 TTGGTGCTGCG 38458 |||| ||||| Sbjct 10129 CTGGTCCTGCG 10119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497981668006400