Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq93 132 2e-25 seq31296 96.9 1e-14 >seq93 Length=99915 Score = 132 bits (146), Expect = 2e-25 Identities = 200/283 (71%), Gaps = 10/283 (4%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || || || || || |||||||| ||||| |||| || || || ||||| |||| Sbjct 6038 ATGCTGTGATCACAGTCCCTGCTTATTTTAATGACTCACAGCGACAGGCCACTAAGGATG 5979 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || || || ||||| ||||||| |||||| | |||| |||||||||||| ||||| | Sbjct 5978 CCGGCCAGATAGCTGGGCTAAATGTACTTCGAGTGATTAGTGAACCTACAGCTGCTGCCC 5919 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATT 451499 | |||||||| | ||| | || | ||||||||| ||| || | ||||| Sbjct 5918 TGGCATATGGTC-CGGACA--------AATCTGAAGAAAAAGTCATTGCTGTGTATGATT 5868 Query 451500 TTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAA 451559 ||||| |||| | || || |||| | || |||| | || || || || || | | Sbjct 5867 CAGGTGGTAGAAC-CTTGGTATTTCTATCCTGGAAATTCAGGAAGGAGTGTTCGAGATGA 5809 Query 451560 AGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 | | |||||||| || ||| |||| |||||||| |||| Sbjct 5808 AATCCACCAATGGGGACACTTCCTTAGGTGGTGAAGACTTTGA 5766 >seq31296 Length=16870 Score = 96.9 bits (106), Expect = 1e-14 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || ||||| || || || || ||||| | || Sbjct 14672 ATGCAGATTTTCGTGAAGACCCTTACAGGGAAAACCATCACGCTCGAGGTTGAGCCCTCA 14613 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || || || | |||||||||||||||||||||||||| Sbjct 14612 GACACTATAGAAAATGTCAAGGCCAAGATCCGGGATAAGGAAGGAATTCCTCCTGATCAG 14553 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || ||| | || || || || |||||||| | |||||| | || || || Sbjct 14552 CAGAGGCTGATCTTCCCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGCCTGACTACAAC 14493 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 || | ||||| | || ||||| | || || ||||| Sbjct 14492 ATCCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACT 14455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1966846893409680