Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq23225 95.1 9e-14 seq10859 89.7 4e-12 seq9614 86.0 5e-11 >seq23225 Length=19588 Score = 95.1 bits (104), Expect = 9e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| || ||||| || || ||||| ||||||||| | || || | ||||| Sbjct 4519 TGTTGTAGCTACTATAGCTTTCGGAATGGGCATTAATAAAGCCGACATTCGCAAAGTTAT 4460 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| ||||| ||| | || ||| ||||| || ||||| |||||||| || || Sbjct 4459 TCATTATGGCGCTCCTAAGGAAATGGAATCCTATTACCAGGAAATCGGTAGAGCTGGCCG 4400 Query 367113 TGATGGA 367119 |||||| Sbjct 4399 GGATGGA 4393 >seq10859 Length=27024 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| || ||||| |||| |||||||||||| || || || ||||| || | ||| Sbjct 13548 TTCTTATCTAGTCCATAGGCAATAGCAGCAGCAGTCGGCTCGTTGATAATCCTAAGGACA 13489 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| |||| |||||||| || || || | || || || || || || Sbjct 13488 TTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCCTGCCGCTGGGAGTCATTGAAGTAG 13429 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | || |||| Sbjct 13428 GCTGGCACTGTGACCACAGCAT 13407 >seq9614 Length=49780 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 635439 AATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTA 635498 ||||||| || || |||| |||||||| ||||| ||||| | || | || |||||| Sbjct 24144 AATGTACACTTATCCTGACTGAGGGAGACTCAGCCAAAACTCTAGCAGTTTCAGGTCTTG 24085 Query 635499 ATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTA 635558 ||| |||||||||| | ||||| || || || |||||||||||| | | ||||| Sbjct 24084 GTGTAGTTGGAAGAGACAAATATGGGGTATTTCCTCTTAGAGGAAAAATACTCAATGTGC 24025 Query 635559 GGGATGCTAGTCCTAAA 635575 | || ||| || |||| Sbjct 24024 GAGAAGCTTCTCATAAA 24008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3763431420384760