Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq25218 309 4e-79 seq157799 242 5e-59 seq10859 181 1e-40 >seq25218 Length=18830 Score = 309 bits (342), Expect = 4e-79 Identities = 840/1271 (66%), Gaps = 36/1271 (3%) Strand=Plus/Plus Query 6896 GGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCA 6955 || ||||| || |||||| ||| | ||||||||| | ||| || ||||||| ||| Sbjct 13447 GGGATCGTGGTGTTTCTCTTAATGAGCGGGGTCATGACACCGCCAGCTGTTTCGATGCCA 13506 Query 6956 AGAGACAGAGGTGTCACGTCCAAGAGTAACAGG---TCTTGAACAGATTCGTTCCCTT-- 7010 || |||| || |||||||| ||||||||| || |||||| ||| | | || Sbjct 13507 AGCGACAATGGAGTCACGTC---GAGTAACAGCAGATCCTGAACA--TTC-TCCGATTTG 13560 Query 7011 -CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 | || | | ||| || || || || | || ||||| || |||||||| |||||||| Sbjct 13561 TCGCCGATGAGGATAGCCGCCTGCACAGCGGCGCCGTAGGCCACCGCCTCGTCGGGGTTG 13620 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || ||||| || || ||||| || ||||| | | | || || || ||| Sbjct 13621 ATGCTCTTGTTCAGCTCCTTGCCGTTGAAGAAATCCTGCAGGAGCTTCTGGATCTTAGGG 13680 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || || || |||| || || || | | || || || | ||| | Sbjct 13681 ATGCGGGTGGAGCCGCCCACCAGCACTATCTCCTGGATCTTGCCCTTGTCCAGCTTGGCA 13740 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCA---TACATTTACGGAACAAGTCCATACACAGT 7246 || || || | ||||| || || |||| | | | ||||| | ||| || Sbjct 13741 TCGCGCAGAGCCTTTTCCACCGGCTCCAGGGTCCCT---CGGAAGAGGTCGGCGTTGAGC 13797 Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| || || || ||||| ||||| || |||||||| ||||| ||||| | ||| || Sbjct 13798 TCCTCGAAGCGGGCGCGGGTGATGGACGTGTAGAAATCCACGCCCTCGTAGAGCGAGTCG 13857 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 || || ||| | | || | | ||| | || ||||| |||||||| || || || Sbjct 13858 ATCTCGATGCTGGCCTGCGTGGACGAGCTCAGGGTGCGCTTGGCGCGCTCGCAGGCAGTG 13917 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | || || | || ||| ||| ||| || ||||| ||||| || || ||| Sbjct 13918 CGCAGCCGGCGCACCGCGCGCTTGTTGGGCTCAATGTCCTTCTTGTGTTTGCGCTTGAAC 13977 Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 || || | | ||| | | | | ||||| ||||| || |||| ||| || || Sbjct 13978 TCCTCCGCCAGGTGGCTGACCATACGATTGTCGAAGTCTTCGCCTCCCAGGTGGGTGTCG 14037 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || || || | || || || ||||| || | || ||| | | | || || || || Sbjct 14038 CCGGCCGTGGACTTCACCTCGAAGATGCCATCCTCGATGGTCAGGATGGACACGTCGAAG 14097 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG------TTCTTA 7600 || || || |||||||| || ||||| |||||| | ||| | | | |||||| Sbjct 14098 GTGCCCCCGCCCAGGTCGAAGATGAGCACGTTCTTCTCGCCCCCCGCGCAGCCCTTCTTA 14157 Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAG 7659 || || || || ||||| ||||| ||||| || || || || || || || ||| || || Sbjct 14158 TCCAGGCCATAGGCGATGGCCGCTGCCGTGGGCTCGTTGATGATGCGCAGCACA-TTGAG 14216 Query 7660 GCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGG 7719 ||| | || || |||| ||||| || || || || ||||| ||||| || ||||| || Sbjct 14217 GCCCGTGATGGTGCCCGCGTCTTTGGTGGCCTGGCGCTGCGAGTCGTTGAAATAGGCGGG 14276 Query 7720 GACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 ||| || | ||||||| | || || || || || | ||| ||||| || ||||| Sbjct 14277 GACGGTGATGACCGCGCTCTGCACCTTGCCCCCCAGGTAGGCTTCGGCGATCTCCTTCAT 14336 Query 7780 TTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAA 7838 || || || ||||| || |||||||| || | | | | || ||| | || || ||| Sbjct 14337 CTTCGTGAGGACCATGGAGGAAATCTCCTCCGG-GAAGAAGGTCTTCATCTCCCCCTTAT 14395 Query 7839 AATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTT 7898 | || || | | |||| || | || | || | || | ||| ||| | | Sbjct 14396 ATTCCACCTGCACTTTGGGCTT---CCCACCCTCGCTCACCACTCTGAACGGCCAGTGCT 14452 Query 7899 TCATATCGTCTTGGACCTGTTG-GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 |||| || || ||| || | |||| ||||| | ||||| || | ||| || || Sbjct 14453 TCATGTCCGACTGCACC-GTGGCGTCCTCGAACTTCCGCCCGATCAGCCTCTTGGCGTCG 14511 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || | ||||| ||||||||||||| ||||||||| || ||||| ||||| || ||| Sbjct 14512 AAGATGGTGTTCGTGGGGTTCATGGCCACTTGGTTCTTGGCGGCGTCGCCGATGAGGCGT 14571 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | || || || || ||||| ||||| || || || || |||||||| || Sbjct 14572 TC---GGTGTCGGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGTCGTTGGCG 14628 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137 || || || || | | | ||| |||| || ||||| || || || || || | || Sbjct 14629 ATGATCTCCACCTTGCCATGTTGGAAGACCCCCACGCAGGAGTATGTGGTGCCCAGGTCG 14688 Query 8138 ATACCGATTGC 8148 || ||||| || Sbjct 14689 ATGCCGATGGC 14699 >seq157799 Length=5674 Score = 242 bits (268), Expect = 5e-59 Identities = 795/1227 (65%), Gaps = 14/1227 (1%) Strand=Plus/Minus Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | || ||| || || || || || ||||| || | |||||||| || | | Sbjct 5364 GTCATCACGCCGCCCGCCGTCTCCAGGCCCAGCGACAGCGGCGCCACGTCCAGCAGCAGC 5305 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 ||||| || || || | || ||| | | |||||| || || |||| ||||||| Sbjct 5304 AGGTCCTGCACGTTCTCAGACTTGTCCCCCATCAGGATGGCCGCCTGCACCGCCGCCCCG 5245 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || |||||||| || ||||| || | || ||||| || ||||| || | ||| Sbjct 5244 TAAGCCACCGCCTCGTCCGGGTTGATGCTCTTGTTCAGGTCGCGCCCGTTGAAGAAGTCC 5185 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | || | || | || ||||| || ||||| || || |||| || | || | Sbjct 5184 TGCAGCAGCTTCTGCACCTTGGGGATGCGCGTCGAGCCGCCCACCAGCACCAGGTCGTGG 5125 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 | | || || || | ||| | ||| || || | || || || || |||| Sbjct 5124 ATCTGCGCCTTGTCCAGCTTGGCGTCGCGCAGGGCCTTCTCCACGGGCTCCAGCGTGCCG 5065 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||||| |||| ||||| ||||| || || || || || ||||| || ||||| || Sbjct 5064 CGGAACAGGTCCGAGCACAGCTCCTCGAAGCGCGCCCGCGTGATGGACGTGTAGAAGTCG 5005 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 | ||| ||| | | ||| || || || | | | | || | | || || | || | | Sbjct 5004 ATGCCCTCGAACAGCGAGTCGATCTCCAGGCTGGCCTGCGTGCTGGACGACAGGGTCCTC 4945 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || |||||||| || ||||| || | || || | ||| ||| ||| | || ||| Sbjct 4944 TTGGCGCGCTCGCAGGCCGTGCGCAGCCGCCGCACGGCGCGCTTGTTCTGGCTGATGTCT 4885 Query 7406 TTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCT 7465 ||||| || || | || ||||| || |||||| | | || | ||||| || Sbjct 4884 TTCTTGTGCTTCCTCTTGAACTCCTCCACGAAGTGGCTCACCAGACGGTTGTCGAAGTCC 4825 Query 7466 TCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATG 7525 || || |||| ||| || || ||||| || || || || || ||||| || | || || Sbjct 4824 TCCCCGCCCAGGTGCGTGTCGCCCGCCGTGGCCTTCACCTCGAAGATGCCGTCGTCGATC 4765 Query 7526 TTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG 7585 | | | || || || ||||| || || |||||||| || ||||| |||| | || Sbjct 4764 ATCAGGATGGACACGTCGAACGTGCCGCCCCCCAGGTCGAAGATGAGCACGTGCCGCTCT 4705 Query 7586 TCGT--CTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAA 7643 | | ||| || |||| | || || || || || || || || || || || || | Sbjct 4704 CCATGACTTCCTT--TATCCAAGCCATAGGCAATGGCAGCAGCTGTGGGCTCGTTGATCA 4647 Query 7644 TACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 | || || ||| || || ||||| || | | || || || || || || | || || Sbjct 4646 TGCGCAGCACA-TTGAGTCCAGCGATCACTCCTGCGTCCTTGGTGGCCTGCCTCTGGGAG 4588 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||||| || ||||| | ||| || | ||||| || | || ||| | | Sbjct 4587 TCGTTGAAGTAGGCGGGCACCGTGATGACAGCATTGGTGACATTGTGGCCCAGAAAAGCC 4528 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | || ||||| || | || |||||||| || ||||| || | || | Sbjct 4527 TCTGCAGTCTCCTTCATCTTCGACAGCACCATCGACGAGATCTCCTCGGGGTAGAAGGCT 4468 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACC 7882 ||| | || || || | || | | |||| || || | | | ||| || Sbjct 4467 TTCTTCTCCCCTTTGTAGGACACCAGCACCTTGGGCTTGCCCCCTTC---GTTGATCACT 4411 Query 7883 TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATA 7942 | | | | |||| ||||| || || || | || |||||| || || || Sbjct 4410 TGAAATGGCCAAAGCTTCATGTCCGACTGCACAACAGGATCATTAAACTTCCTGCCAATT 4351 Query 7943 AGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCG 8002 ||||| || ||||| || || ||||| | ||||||||||| |||||||| || || Sbjct 4350 AGACGTTTGGCATCGAACACAGTGTTCTGCGGGTTCATGGCCACCTGGTTCTTGGCTGCA 4291 Query 8003 TCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATT 8061 || || || || || || | || || || || ||||| | |||| |||||| | || Sbjct 4290 TCGCCAATGAGCCGCTC---GGTGTCAGTGAAGGCCACGTA-GCTGGGCGTCGTTTGGTT 4235 Query 8062 CCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATA 8121 || |||||||| || || || || || | ||| || | ||||| |||||||| || Sbjct 4234 ACCCTGGTCGTTGGCGATGATCTCCACCTTGCCGTGCTGGAACACGCCCACGCACGAGTA 4175 Query 8122 CGTTGTTCCTAAATCAATACCGATTGC 8148 ||| || || | || || || || || Sbjct 4174 CGTGGTGCCCAGGTCGATGCCTATGGC 4148 >seq10859 Length=27024 Score = 181 bits (200), Expect = 1e-40 Identities = 364/540 (67%), Gaps = 0/540 (0%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| ||||| || | || ||||| ||||| || || || Sbjct 14180 GCACCATAAGCAACAGCTTCATCAGGGTTGATGCTCTTGTTCAGCTCTTTTCCATTGAAG 14121 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | | | ||||| || ||||||| || || ||||| |||| || || Sbjct 14120 AAGTCCTGCAGAAGCTTCTGAATCTTGGGGATTCTGGTAGAACCACCCACCAGGACAATA 14061 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | || || || | || | |||||||| | ||||| ||||| |||| | Sbjct 14060 TCATGGATCTGAGACTTGTCTAGTTTGGCATCTCGAAGGGCCTTTTCTACAGGGTCCAGA 14001 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||| ||| | | ||| ||||| || |||||||||||||| |||||| Sbjct 14000 GTGCCCCGGAACAGGTCAGCATTTAATTCTTCAAATCGAGCACGGGTAATGGAGGTATAG 13941 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || | || || || | |||||||| ||||| | | || | | || || | Sbjct 13940 AAGTCGATTCCCTCATAGAGAGAATCAATCTCAATACTGGCCTGGGTGCTGGAGGAGAGG 13881 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || || ||||| || || || | ||| | | || | | ||| | Sbjct 13880 GTGCGCTTCGCCCGTTCACAAGCAGTACGCAGACGCCTGACAGCTCTCTTGTTCTCACTG 13821 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| || || ||||||||||| || ||| || | | || || Sbjct 13820 ATGTCCTTCTTGTGCTTTCGTTTAAACTCAGCAATGAAATGGTTGACCATCCTGTTGTCA 13761 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || ||||| ||||||||||| || || || || || | |||||||||||| || || | Sbjct 13760 AAGTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTTGATTTGACTTCAAAAATTCCATCC 13701 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 ||||| | | | || |||||||| |||||||| |||| |||||| ||||| || ||| Sbjct 13700 TCAATTGTGAGGATGGAGACATCAAAAGTACCACCTCCCAAGTCAAAGATGAGCACATTC 13641 Score = 95.1 bits (104), Expect = 2e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 |||||||| || || || || ||||| || || || || || || ||||| | ||| ||| Sbjct 13548 TTCTTATCTAGTCCATAGGCAATAGCAGCAGCAGTCGGCTCGTTGATAATCCTAAGGACA 13489 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || ||||||||||||||| | |||||||| || || || || || || || || ||||| Sbjct 13488 -TTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCCTGCCGCTGGGAGTCATTGAAGTA 13430 Query 7714 GGCCGGGACCGTTACGACCGC 7734 ||| || || || || || || Sbjct 13429 GGCTGGCACTGTGACCACAGC 13409 Score = 89.7 bits (98), Expect = 7e-13 Identities = 136/193 (70%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 ||||||||||||| |||||||||| || || |||||||| || ||||| || | | Sbjct 12839 CAAAAACTGTGTTGGTGGGGTTCATCGCAACCTGATTCTTCGCAGCATCCCCAATCAATC 12780 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCG 8075 |||| | || ||||| || || || ||| || ||||| || || ||||| || | Sbjct 12779 GTTC---CGTGTCAGTAAAAGCCACATAGCTTGGTGTGGTTCGGTTACCCTGGTCATTGG 12723 Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 |||| || || || | | || ||||||| || ||||| || || || || | || Sbjct 12722 CAATTATCTCCACCTTCCCATGCTGGAAGACGCCCACACACGAGTAGGTGGTGCCAAGAT 12663 Query 8136 CAATACCGATTGC 8148 |||| |||| ||| Sbjct 12662 CAATGCCGACTGC 12650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632350441986400