Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq113403 114 1e-20 seq229036 98.7 8e-16 seq167124 98.7 8e-16 seq154461 96.9 3e-15 seq74968 93.3 3e-14 seq274460 87.8 1e-12 >seq113403 Length=6015 Score = 114 bits (126), Expect = 1e-20 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||||| ||||| | | ||| || | | | || Sbjct 5777 CCTCATGRTGCACATGGCATGTGTATTTGTGCTCCTCCCCAGAAGGCACCACCAGAGATG 5718 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| |||| |||||||| |||||| | ||| | | || Sbjct 5717 CCCACTTCTGGAAGGTTCCATCGCCAGAAGGTCTGGTCTCCACCAACTCCATGTCCTGAG 5658 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 || ||| ||| | ||| | ||||| |||| || ||||| ||||| |||||||| || Sbjct 5657 TCTGTTCCTCCTCCCCCCTCTGCCAGGTTAGGGCGATGTCAGCAGGGTAGAAGCCCAGGG 5598 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGTG 588 |||| || | ||||| || | || || || | | | || | |||||| || ||| || Sbjct 5597 CCCAGCACCTCAGTGTGACATCACTGTTAGATCTAGGATGCCGGGTCACATGTGCCTTTG 5538 Query 589 G 589 | Sbjct 5537 G 5537 >seq229036 Length=1072 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||||| ||||| | | ||| || | | | || Sbjct 264 CCTCATGGTGCACATGGCATGTGTATTTGTGCTCCTCCCCAGAAGGCACCACCAGAGATG 323 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| ||||||||||| ||| |||||||| |||||| || ||| | | || Sbjct 324 CCCACTTCTGGAAAGTTCCATCCCCACAAGGTCTGGTCTCCACCAGCTCCATGTCTTGAG 383 Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 || ||| || || ||||| | ||||| | | ||| ||| ||||| |||||||| | Sbjct 384 TCTGTTCCTCCTCCTCCC-TCTGCCAGATCAGGGTGATGAAGGCAGGGTAGAAGCCCAGG 442 Query 528 GCCCAACATTTTAGTGTTACTTGACGGTCAG 558 ||||| || | || || |||| || |||| Sbjct 443 GCCCAGCACCTCAGGGTGACTTCACCTTCAG 473 >seq167124 Length=3090 Score = 98.7 bits (108), Expect = 8e-16 Identities = 172/246 (70%), Gaps = 7/246 (3%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| || || ||||| ||||| | | ||| || | | | || Sbjct 1681 CCTCATGATGCACATGGCATGTGTATTTGTGCTCCTCCCCAGAAGGCACCACCAGAGATG 1740 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| |||| |||||||| |||||| || ||| | | || Sbjct 1741 CCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAGCTCCATATCCTGAG 1800 Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAG----CC 523 || ||| || || ||||| | ||||| || | ||| ||| |||||||||||| || Sbjct 1801 TCTGTTCCTCCTCCTCCC-TCTGCCAGGTCAGGGTGATGGAGGCAGGATAGAAGAAGCCC 1859 Query 524 AGTGGCCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAAC 583 || |||||| || | || || || | || | |||| | || | |||||| || | Sbjct 1860 AG-GGCCCAGCACCTCAGGGTGACATCACCTTTAGGTCCAGGATGCCGGGTCACATGTGC 1918 Query 584 CTGTGG 589 || ||| Sbjct 1919 CTTTGG 1924 >seq154461 Length=5428 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 407 TGCCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATC 466 |||||||||||| || |||||||| |||| |||||||| |||||| || ||| | | Sbjct 3872 TGCCCACTTCTGGAAGGTTCCATCGCCAGAAGGTCTGGTCTCCACCAGCTCCATGTCCTG 3931 Query 467 AGTCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGT 526 |||| ||| ||| || || | ||||| | | ||| ||| |||||||||||||| | Sbjct 3932 AGTCTGTTCCTCCTCTTCCCTCTGCCAGCTCAGGGTGATGAAGGCAGGATAGAAGCCCAT 3991 Query 527 GGCCCAACATTTTAGTGTTACTTGAC 552 |||||| || | || || |||| || Sbjct 3992 GGCCCAGCACCTCAGGGTGACTTCAC 4017 >seq74968 Length=9328 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| |||||||| || ||| | ||||||| || ||| || | | |||| Sbjct 348 CCTCATGCAGCACATGACATGTGTATCTCTGCTCTTCTCCTGAAGGCACCACCACAGCTG 289 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || |||||| | || | | ||| | | | Sbjct 288 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGCTCTCAATAAGATCCATGTCCTGGG 229 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 |||| | ||| | || | ||||| || | ||| ||||| |||||||||||||| || Sbjct 228 TCAGGTCCTCCTCATCCCTCTGCCAGGTCAGGGTGATGTCTGCAGGATAGAAGCCCAGGG 169 Query 529 CCCAACATTTTAGTGT 544 |||| || || || || Sbjct 168 CCCAGCACTTCAGGGT 153 >seq274460 Length=330 Score = 87.8 bits (96), Expect = 1e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 407 TGCCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATC 466 |||||||||||| || |||||||| |||| |||||||| |||||| | ||| | | Sbjct 8 TGCCCACTTCTGGAAGGTTCCATCCCCAGAAGGTCTGGTCTCCACCAACTCCATGTCCTG 67 Query 467 AGTCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAG 525 |||| ||| || || ||||| | ||||| || | ||| ||| |||||||||||||| Sbjct 68 AGTCTGTTCCTCCTCCTCCC-TCTGCCAGGTCAGGGTGATGAAGGCAGGATAGAAGCCCA 126 Query 526 TGGCCCAACA 535 |||||| || Sbjct 127 GGGCCCAGCA 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396048329729760