Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq141308 145 2e-29 seq66926 129 1e-24 seq93163 116 8e-21 seq106596 114 3e-20 seq68848 95.1 3e-14 >seq141308 Length=4330 Score = 145 bits (160), Expect = 2e-29 Identities = 168/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || ||||||||||| || || ||||| |||| || || Sbjct 4285 CTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTG 4226 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| ||||| ||||| || | || ||||| || || |||||| Sbjct 4225 CGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCT 4166 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || || |||||||||||| |||||||| ||| || || || Sbjct 4165 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCGACCTCC 4109 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | ||||| ||||||| || || ||||| | |||||| Sbjct 4108 AGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATT 4064 >seq66926 Length=10282 Score = 129 bits (142), Expect = 1e-24 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || ||||| || ||||||||||| || || ||||| |||| || || Sbjct 10113 CTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTG 10172 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| ||||| ||||| || | || ||||| || || |||||| Sbjct 10173 CGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCT 10232 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || ||||| || || || |||||||||||| |||||||| Sbjct 10233 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC 10273 >seq93163 Length=7565 Score = 116 bits (128), Expect = 8e-21 Identities = 157/217 (72%), Gaps = 9/217 (4%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || ||||||| | ||||| |||||||| Sbjct 7026 ACCAGGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCAGAGAGAGTGTGGCCATCTTCC 7085 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAA---TGCCTTCTTTGTCT 195048 |||||||| || | ||||| ||| | || ||||| | || | |||| |||||||| Sbjct 7086 AGCTGCTTGCCCACAAAGATGAGTGGCTGCTGGTCGCGGGGCAGGGTGCCCTCTTTGTCC 7145 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACC 195105 || || || ||| || ||||| |||||||| ||| ||||| || ||||| | Sbjct 7146 TGGATCTTGGCCTTAACATTCTCTATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 7202 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| || |||| || || ||||| | |||||||| Sbjct 7203 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTT 7239 >seq106596 Length=6504 Score = 114 bits (126), Expect = 3e-20 Identities = 139/188 (74%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||| | || ||||||||||| || || ||||| || | || || | ||||||| Sbjct 5534 AACCAGGAGCAGGGTGGACTCTTTCTGGATCTTGTAGTCAGACAGGGTGCAGACATCTTC 5475 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| ||||| ||||| | || ||||| || |||||||| | ||||||||| Sbjct 5474 CAGCTGCTTGCCTGCAAAGAT-TCCCTCTGCTGGTCAGGGGGAATGCCCTTTTTGTCTTG 5416 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || ||| |||||| |||||||| ||||| ||| || || ||||| | ||||| Sbjct 5415 GATCTTTGCCTTGACCTTCTCAATAGTGTCTCTGGGTTCAACCTCCAGGGTGATGGTCTT 5356 Query 195111 TCCTGTCA 195118 ||||||| Sbjct 5355 GCCTGTCA 5348 >seq68848 Length=10048 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/144 (75%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||||||||| ||||| || ||||| |||| || || | |||| | ||||| Sbjct 7289 GTGCAAAGTGGACTC-TTTTGGATGTTGTAGTCGGACAGGGTCCAGTCATCCTACAGCTG 7347 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||| || || || | || ||||| || || |||||||| |||||||| || | Sbjct 7348 CTTGCCTGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTC 7407 Query 195057 TTGCTTGACGTTCTCAATGGTGTC 195080 |||||| ||||| |||||||| Sbjct 7408 GGCCTTGACATTCTCGATGGTGTC 7431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1104499729442820