Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq141308 107 1e-18 seq68848 93.3 3e-14 >seq141308 Length=4330 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||| ||| | ||| |||||||| ||||| ||||| || Sbjct 4291 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 4232 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 4231 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4172 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| |||||| | || | |||| || ||| || Sbjct 4171 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACC 4112 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || || || || |||||||| ||||||||||| Sbjct 4111 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 4065 >seq68848 Length=10048 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/214 (71%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||||| || ||||| ||||| || ||| | | ||||| | | Sbjct 7284 ACCAAGTGCAAAGTGGACTCTTT-TGGATGTTGTAGTCGGACAGGGTCCAGTCATCCTAC 7342 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || |||||||| || | |||||||| | || | || |||||||| Sbjct 7343 AGCTGCTTGCCTGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 7402 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||| ||||| || || || | |||| || || || || | || ||||| | Sbjct 7403 ATCTCGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTTGACCTCAAGAGTGATGGTCT 7460 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | ||| | || |||||||||||||||||||| || Sbjct 7461 TGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 7494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323247014822880