Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq125977 154 2e-32 seq55738 114 1e-20 seq51998 86.0 7e-12 seq18550 84.2 2e-11 >seq125977 Length=8618 Score = 154 bits (170), Expect = 2e-32 Identities = 189/258 (73%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 19047 CCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAAC 19106 ||||||||| || ||||| || ||||| ||||| || |||||||| || ||| | || || Sbjct 4824 CCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAGAGGCCAC 4765 Query 19107 TAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTT 19166 | || ||||||||| |||| || || | |||||| ||| ||||| | ||||| Sbjct 4764 AACTCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACACAGGGCCCAGACGGCCTT 4705 Query 19167 CTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATC 19226 |||||| ||| | ||||||||||| |||| ||| || ||||| | ||| | | ||| Sbjct 4704 CTTTTTCACAGAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAATC 4645 Query 19227 TTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCAT 19286 ||||| || | || || | | ||||||||||| ||||| || ||||| || || || Sbjct 4644 TTTAATGTAAGTGTCAATGAGGAGCCTGTACATTTCAGAATGTATGTTTTCCATGGCAAT 4585 Query 19287 CTGAAATCCGTAAAAACA 19304 || || || || ||||| Sbjct 4584 TTGGAAGCCATAGAAACA 4567 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 |||||| || ||||| ||||| |||| ||||| ||||| || || | || || |||| Sbjct 5044 ACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAA 4985 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGA 19058 |||| | |||||||||||||| | ||| || | ||||||||| || Sbjct 4984 ATGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGA 4939 >seq55738 Length=16555 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | ||||| |||||||| | |||||||||||||| | ||| | Sbjct 9267 CCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 9208 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||| ||||| || |||||||| || ||||| | Sbjct 9207 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGG 9148 Query 19103 CAACTAGTCTTTCTCC 19118 | || | || |||||| Sbjct 9147 CCACAACTCGTTCTCC 9132 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/146 (74%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 18616 AAATCAACATCCAAAGAAAAAGAATTCTCTTC---ATTAGAATTCATTACTCCCATTTTT 18672 || ||| ||||||| | |||||||||||| | ||| || ||| || ||||| | Sbjct 11159 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGA---CATCACCCCCATCCTC 11103 Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| ||| | |||| || |||||||| || || || || |||| ||| ||| |||| Sbjct 11102 TGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCC 11043 Query 18733 ATAAAATCAAATGGATTTTTTACATT 18758 || || ||||| ||||||| ||| || Sbjct 11042 ATGAAGTCAAACGGATTTTCTACTTT 11017 >seq51998 Length=12422 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 143321 ATCCAAATAAGATGC-ATAATGGGACATTAGAATTTACCAGTATTGATGCACATAATGGT 143379 |||| || ||||||| || |||| ||| | || || ||||| || ||||| || ||||| Sbjct 13 ATCCCAA-AAGATGCCATGATGGCACACTGGAGTTCACCAGCATCGATGCGCACAATGGC 71 Query 143380 TATGTAAATTCACGACGTGGAGATCTTGAAATACTTGGTTATTGCATGATAAAGTGGTTA 143439 | ||||||||||| || | |||||||||||||||||||||||| ||||| | Sbjct 72 GTGGCCCCATCACGACGTGGCAATTTGGAAATACTTGGTTATTGCATGATACAGTGGCTC 131 Query 143440 GGTGGC 143445 ||||| Sbjct 132 AGTGGC 137 >seq18550 Length=27441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | || || || | || || ||||| || || || || || || Sbjct 2466 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 2525 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | ||| ||||| ||||| || |||||||| | |||| | ||| || Sbjct 2526 TCATTATTCCCCAGAATCTGAGCGGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 2585 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 2586 TTTCTTATACCATA 2599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559646341874400