Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq10859 123 2e-22 seq93 109 4e-18 seq132764 91.5 1e-12 >seq10859 Length=27024 Score = 123 bits (136), Expect = 2e-22 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || || ||||| || || |||||||| || || || || || Sbjct 13400 GTTACCAATGCTGTGGTCACAGTGCCAGCCTACTTCAATGACTCCCAGCGGCAGGCAACA 13459 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || ||||| ||| | |||||||| || || |||||| Sbjct 13460 AAAGATGCTGGAACTATTGCTGGCCTCAATGTCCTTAGGATTATCAACGAGCCGACTGCT 13519 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||| |||||||| ||||| Sbjct 13520 GCTGCTATTGCCTATGGACTAGATAA 13545 Score = 86.0 bits (94), Expect = 5e-11 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTT-AATTTAGAAG 552507 |||||| ||| || | || || ||||| || | ||||| | ||| || ||| | | Sbjct 14835 TGAAGGTGAACGAGCCATGACCAAGGATAACAACCTGCTTGGAAAGTTTGAACTTACA-G 14893 Query 552508 GTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCA 552567 | |||||||| || |||||||| || || || |||||||| ||||| || || ||||||| Sbjct 14894 GCATTCCTCCAGCACCTCGTGGTGTTCCCCAGATTGAAGTCACTTTTGACATTGATGCCA 14953 Query 552568 ATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 |||| || | ||||| ||||| ||||| Sbjct 14954 ATGGCATCCTCAATGTTTCTGCTGTAGATAA 14984 >seq93 Length=99915 Score = 109 bits (120), Expect = 4e-18 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || || || || ||||||||||||||||| || || || ||||| |||| Sbjct 6038 ATGCTGTGATCACAGTCCCTGCTTATTTTAATGACTCACAGCGACAGGCCACTAAGGATG 5979 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || | || ||||| || ||||| ||||| | || | ||||||||| |||||||| | Sbjct 5978 CCGGCCAGATAGCTGGGCTAAATGTACTTCGAGTGATTAGTGAACCTACAGCTGCTGCCC 5919 Query 550518 TTGCATATGG 550527 | |||||||| Sbjct 5918 TGGCATATGG 5909 >seq132764 Length=4799 Score = 91.5 bits (100), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 550403 GTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGA 550462 || || || || || || |||| ||||||||||| || || || ||||| |||||||| Sbjct 3693 GTGATCACAGTCCCTGCTTATTGAAATGACTCACAGCGACAGGCCACTAAGGATGCTGGC 3752 Query 550463 CGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCA 550522 | || |||||||| ||||| ||||| | || | ||||| | | ||||| || || ||| Sbjct 3753 CAGATAGCTGGACTAAATGTACTTCGAGTAATTAGTGAACTTCCAGCTGCCGCCCTGGCA 3812 Query 550523 TATGGACTTGATAAA 550537 ||| | || || ||| Sbjct 3813 TATAGTCTGGACAAA 3827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4010762094625400