Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq75442 100 4e-16 seq79529 86.0 8e-12 seq78030 84.2 3e-11 seq88852 82.4 1e-10 >seq75442 Length=17584 Score = 100 bits (110), Expect = 4e-16 Identities = 176/253 (70%), Gaps = 10/253 (4%) Strand=Plus/Plus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| ||| | | || | ||| |||| || |||| | |||| ||| ||||||||| Sbjct 5859 ACTGAGTAACTTAGAAGTTATCAACCACACTCGCCTGTTTGAGAACGGGACCTGCGAGAT 5918 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGG----AGG 2322 ||| ||||||||| |||| ||| | || ||| | | || | |||| |||| ||| Sbjct 5919 CCACCTGACCTGTACTGTGGAGAACCCAAATCATA----CTGCCTCAATTGGGTGGCAGG 5974 Query 2323 CCTTGGGCAAGA-CGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAAC 2381 ||| || || | | | | || | || || || |||| |||||||||||| | ||| Sbjct 5975 CCTCAGGAAACATCTCAT-TAGGGGACCCAAATCTCATTGTCTCCTGGGACCCAAAGAAT 6033 Query 2382 AGCAGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACG 2441 | |||| |||| || || ||| ||| ||| |||| |||||||| ||| || | Sbjct 6034 TCCCGTGACCAGAGTTATACCTGCCACGCTCTGAACCCTGTCAGCAATCTGTCTGTCTCT 6093 Query 2442 GTCTCGGCCCAGA 2454 ||||| ||||||| Sbjct 6094 GTCTCTGCCCAGA 6106 >seq79529 Length=8844 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || |||||||| || | ||||||||||| ||| || || ||||| || || | |||| Sbjct 2826 CCCTCATGTTGCACATGGCATGTGTATCTGTGCTCCTCCCCGGAAGGCACCACCACAGCT 2885 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || | ||||| || || || | || || | | |||| | || || Sbjct 2886 GCCCACTTCTGGAAGTTTCCATCCCCTGCAGGCCTGGTGTCCACCAGCTCCATGTCCTGG 2945 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | |||||||| || || | | ||| || | |||| ||||| || || || || | | Sbjct 2946 GTCTGATCTTCCCCATCCCTCTGCCAGGTCAGGGTTATCTCAGCTGGGTAGAATCCAAGA 3005 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 3006 GCCCAGCACC 3015 >seq78030 Length=9001 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 14177 GCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGC 14236 ||| |||||||| |||| |||||||||||| ||| || |||||||| || || | ||| Sbjct 4481 GCCCTCATGTTGCACGTGACATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGC 4422 Query 14237 TACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTG 14296 | |||| || || || || ||||| || | || | || || | ||| | ||||| Sbjct 4421 TGCCCACTTCTGGAAGGTTCCATCCCCTGAAGGCCTGGTCTCCACAAACTCCATTTCTTG 4362 Query 14297 ACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAA 14356 | | || || || || |||| | ||| || | || ||||| || || || | | | Sbjct 4361 AGTCTGTTCCTCCCCATCTCTCTGCCAGGTCAGGAAGATCTCAGCAGGGTAGAAGCTCCA 4302 Query 14357 AGCCCAGCACC 14367 |||||||||| Sbjct 4301 GGCCCAGCACC 4291 >seq88852 Length=7939 Score = 82.4 bits (90), Expect = 1e-10 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 14190 ACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCATTTTTGA 14249 |||| ||||||||||| ||| || |||||||| || || | |||| |||| || || Sbjct 2977 ACGTGGCATGTGTATCTCTGCTCCTCCCCAGAAGGCACCACCACAGCTGCCCACTTCTGG 2918 Query 14250 AACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTGATCTTCT 14309 || || ||||| || ||||| | || || | | ||| | || || | || || || Sbjct 2917 AAGGTTCCATCCCCTGCTGGTCTGGTCTCCACCAACTCCATGTCCTGGGTCTGGTCCTCC 2858 Query 14310 CCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCAGCACC 14367 || ||| | ||| || | | || || | ||||||||||||| ||||||||||| Sbjct 2857 CCATCTTTTTGCCAGGTCAGGGTGATCTCCGAAGGATAAAAACCCAGAGCCCAGCACC 2800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626526467621600