Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq11430 127 2e-24 seq1257 87.8 1e-12 >seq11430 Length=26483 Score = 127 bits (140), Expect = 2e-24 Identities = 130/167 (78%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 ||| || |||| ||| || |||| ||| ||||| || | |||||||| ||||| ||||| Sbjct 7535 TAGGCCTGTGATGTGTGCAATCACGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGG 7594 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC-GTCGC 29986 || || || ||||| || || ||||||||||||||||| || || ||||| || |||| Sbjct 7595 CACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGC 7654 Query 29987 TCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 | || || || ||||| | || |||||| ||||| || ||||| ||| Sbjct 7655 T-ACATAGAATTGACAGAGGGCGTGGCAAGGAGGCAGTGCCATCAGG 7700 Score = 91.5 bits (100), Expect = 1e-13 Identities = 127/174 (73%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || ||||| ||||||||||| || || || || |||||||| Sbjct 12945 CATATCTTTGTAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTC 13004 Query 30210 TCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 || || | | |||| ||| ||| |||||| ||| |||| ||| || ||||| | Sbjct 13005 CCCTTCCTGTC-GTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCAT 13063 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30322 ||||||| | || || || ||| || ||||| | |||||||| || |||| Sbjct 13064 CCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGATCC-CTGA 13116 >seq1257 Length=62205 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || ||||| |||||||| |||| || || |||||| | | ||||| |||||| || || Sbjct 31892 TTGAGCTCTCTGCTGAGAACTATATTGATTCTGTCTTTTAAAGGTCGATTCTTCTCAGGA 31951 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || || | ||||| ||||| | |||||| || ||| Sbjct 31952 ATGGAGAACCAGGTTTTCCGGCCCATAATCACAAGGTTCTGTTTACCT 31999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406872299737580