Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq97327 179 7e-40 seq26987 141 2e-28 seq18550 95.1 2e-14 seq125977 87.8 3e-12 seq172906 84.2 4e-11 seq35409 84.2 4e-11 >seq97327 Length=11792 Score = 179 bits (198), Expect = 7e-40 Identities = 183/239 (77%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||| ||||| | || | ||| || ||||| ||| ||||| |||||||| || |||| Sbjct 2820 GCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGCTTGAGCTGGGCCACTTGCTCCC 2761 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 | || | | ||| ||| | ||||| || ||||| |||| ||| ||| |||||| || | Sbjct 2760 GTAGGAGGCCCGCAGTACTCGACAGCCCCGCGTTCTCAGCCTTCAGCGTCTTCACCTTGT 2701 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 ||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| | || Sbjct 2700 CCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGCCTGT 2641 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || ||| Sbjct 2640 TCCGCAGCCGCTTTCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGGGAC 2582 >seq26987 Length=18208 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||||||||| || |||||||| || ||||| | | ||||| | ||| Sbjct 254 AGGACTTTCTGTTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCGGTGGACGCCAGC 195 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||| ||| |||||||||||||| |||| ||| || ||||| Sbjct 194 TCGGTGTTCTGGCTTTTGAGGGTCTTGACTTTCTCCTCCAGGCGCGAGATACGCTCCAGC 135 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || ||||| || ||||||||| Sbjct 134 TTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCTCTTGCGCTCCGCCTTG 75 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 || |||||||| ||||||||||| || ||| Sbjct 74 ATACGTTCCTGCGTGTCCATGTCGATGGGCGAC 42 >seq18550 Length=27441 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || || ||||||||||||||| |||||||||||||||||| ||| Sbjct 6894 GTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGG 6953 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 6954 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 7012 Query 213647 GGAC 213650 ||| Sbjct 7013 AGAC 7016 >seq125977 Length=8618 Score = 87.8 bits (96), Expect = 3e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48458 TGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC 48517 ||||| || ||||| | |||||| ||||| |||||| | || | ||| | | Sbjct 4494 TGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCACTCTACC 4435 Query 48518 AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAA 48577 ||||| ||||||||||| |||| || |||||||| || ||||| | | ||| Sbjct 4434 AGATTTTCATTGACTATGACATCACTCGCCGCAAAGAAAGCCAGGACGTAAGATATAAAA 4375 Query 48578 TGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCT 48637 || | ||||| ||| | || || | |||| || | || ||| |||||||| || Sbjct 4374 TGTCTCTCGTCGTGTTTCAGTGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCTCC 4315 Query 48638 TCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 || ||||||||||||| || ||||| |||||||| Sbjct 4314 TCAGCAGTCCAGAAGGAGGCCTCGGCTTTCTTGTACAT 4277 >seq172906 Length=2851 Score = 84.2 bits (92), Expect = 4e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 |||| |||| |||||| || |||| ||||| ||| || ||||||| || |||| | Sbjct 1441 CTTCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 1382 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 | |||||||| || || || || || ||||||||||| | ||| ||||| || || || | Sbjct 1381 TCAGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGG 1322 Query 48273 C 48273 | Sbjct 1321 C 1321 >seq35409 Length=15776 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||| ||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 267 TTCACTTTTTCCTCTAGCCGGGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 208 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || ||||| |||||||||| Sbjct 207 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGAGACTCCATGTCG 148 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 147 ATGGGGGAC 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927451987686400