Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq172906 93.3 8e-14 seq55738 87.8 3e-12 >seq172906 Length=2851 Score = 93.3 bits (102), Expect = 8e-14 Identities = 97/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| ||||| ||| | || ||| || || ||||| || ||||||| Sbjct 1316 TGGTGGCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCATTTGCTGCTATCTTCT 1375 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||| ||| ||| || ||||||||| || ||||| || ||||| || ||||||||| Sbjct 1376 GGCTGAAGAAGAGAGGCCTCATGCCCGGACT-CACTTTCTCAAACGAACTGATCAGCAGG 1434 Query 26002 GACGA 26006 || || Sbjct 1435 GATGA 1439 >seq55738 Length=16555 Score = 87.8 bits (96), Expect = 3e-12 Identities = 98/126 (78%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || |||||||||||||| || || ||||| ||| || || ||||| | || |||||| Sbjct 9144 GTGGCCTTTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGG 9203 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGG 26002 |||||| | | |||||| ||||| || || ||| |||||||| ||||| || ||||| | Sbjct 9204 CTCAAG-AAACGGGGACTGATGCCTGGCCT-TACATTTTCCAATGAGCTTATTAGCAGAG 9261 Query 26003 ACGAGG 26008 | |||| Sbjct 9262 ATGAGG 9267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 924775763142400