Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq35260 163 4e-35 >seq35260 Length=15809 Score = 163 bits (180), Expect = 4e-35 Identities = 198/267 (74%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 153745 CCCGCGTCCCTCAGATGCTCGTTGAAAACTA-CACAAGAACCTTTAATTGTAACGTGGCA 153803 || || ||| | ||||| || ||||| ||| | || ||||| || ||||| || ||||| Sbjct 10875 CCTGCATCCTTAAGATGTTCTCTGAAA-CTATCCCAGGAACCCTTGATTGTGACATGGCA 10933 Query 153804 AAAGAAGAAAGCTGTAGGTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGT 153863 || |||||||||||| | |||||||| |||| ||| || ||||||||||| || || || Sbjct 10934 GAAAAAGAAAGCTGTAAGCCCAGAAAACATGGTCACTTACAGCAAAGCCCATGGAGTTGT 10993 Query 153864 GCTTCAGCCCACATATAAAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAG 153923 | ||||| |||||| ||| || | || || || || | || || | |||| || Sbjct 10994 AGTACAGCCTGCATATAGAGACAGGGTAAACATCACTGAGCTGGGACTCTGGAACACAAG 11053 Query 153924 TATAACGTTTTGGAATGCAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATAT 153983 || || || ||||| |||| ||||| ||||||||||| || |||||||| || |||| Sbjct 11054 CATCACCTTCTGGAACACAACCCTGGACGATGAAGGCTGCTACATGTGTCTCTTCAATAC 11113 Query 153984 GTTCGGTTCTGGTAAGGTATCGGGAAC 154010 || | |||||| ||| | || || || Sbjct 11114 TTTTGTTTCTGGGAAGATCTCAGGGAC 11140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 646454782529600