Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq10859 107 1e-17 seq31296 87.8 1e-11 >seq10859 Length=27024 Score = 107 bits (118), Expect = 1e-17 Identities = 231/341 (68%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 475484 AGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACT 475543 || ||||| | |||||||||||||| || ||||| | || || || || || | Sbjct 13843 AGGCGTCTGCGTACTGCTTGTGAACGGGCGAAGCGCACCCTCTCCTCCAGCACCCAGGCC 13902 Query 475544 ACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCT 475603 | | |||| |||||||||| | ||| ||||| || | |||| ||||| | ||| Sbjct 13903 AGTATTGAGATTGATTCTCTCTATGAGGGAATCGACTTCTATACCTCCATTACCCGTGCT 13962 Query 475604 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTT 475663 ||||||||| | | |||| || || | || | || || || ||| | | Sbjct 13963 CGATTTGAAGAATTAAATGCTGACCTGTTCCGGGGCACTCTGGACCCTGTAGAAAAGGCC 14022 Query 475664 CTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCA 475723 || ||||| | ||||| ||||| || || ||||||| ||||| || || || ||||| Sbjct 14023 CTTCGAGATGCCAAACTAGACAAGTCTCAGATCCATGATATTGTCCTGGTGGGTGGTTCT 14082 Query 475724 ACAAGAATTCCAAAAATAAGAGAAATGCT--TTCATCA-TATTTTAATGGTAAAAAGTTA 475780 || ||||| || || || |||| ||| | || | | || ||||| ||| || | Sbjct 14083 ACCAGAATCCCCAAGAT-TCAGAA--GCTTCTGCAGGACTTCTTCAATGGAAAAGAGCTG 14139 Query 475781 AATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGC 475821 || | || | || ||||||||||||||||| ||||| || Sbjct 14140 AACAAGAGCATCAACCCTGATGAAGCTGTTGCTTATGGTGC 14180 Score = 100 bits (110), Expect = 2e-15 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| | || |||||| | || || || ||| ||||| | || | || |||| || Sbjct 12649 TGCAGTCGGCATTGATCTTGGCACCACCTACTCGTGTGTGGGCGTCTTCCAGCATGGGAA 12708 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || || ||||||||||||||||| ||||| |||| |||||| ||||| ||||||| Sbjct 12709 GGTGGAGATAATTGCCAATGACCAGGGTAACCGAACCACACCAAGCTATGTGGCTTTTAC 12768 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC 474492 ||| || |||| | ||||| |||||||| || |||| | ||| Sbjct 12769 TGACACGGAACGATTGATTGGGGATGCTGCGAAGAATCAGGTTGC 12813 >seq31296 Length=16870 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| | ||| | | |||||| || ||||| |||| || || || | || Sbjct 14494 TTGTAGTCAGGCAAAGTACGGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGC 14553 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||||||||||||||||||||| || | ||||| |||||| ||| ||||| || Sbjct 14554 TGATCAGGAGGAATTCCTTCCTTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCT 14613 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || || || || ||||| || || || ||||| |||||||| || Sbjct 14614 GAGGGCTCAACCTCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTG 14669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3253146270168080