Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq41825 374 1e-98 seq42097 143 3e-29 seq39551 93.3 5e-14 >seq41825 Length=16783 Score = 374 bits (414), Expect = 1e-98 Identities = 674/982 (69%), Gaps = 5/982 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| || |||| ||| || |||||| || ||| || ||||| || Sbjct 9146 CAGATGCTCATCCAAGCACTGGATGGCAAAGGGGTCAACATCAATGTCAAACTTATTGGC 9087 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 || | ||||| || | || |||||| || ||| || | ||||| ||||| || Sbjct 9086 AAAGAAGTGGTGT---TTGCGAAGCATCCAGCTCAAGTCACCAGCTCCGAAAACGCACAC 9030 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | || || ||| |||| || ||||| |||| ||||| | || |||||||| Sbjct 9029 GGAGCGCACATGGACTCCGCTGCACGGTGGGTAAGGAGCGCCTTTGGAAACATCACCTTC 8970 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| |||||||| || | || | ||||||||| ||| || || | Sbjct 8969 AAAGTACTGCCACTTGACAAACCTAGCGACAGCATTCATGTCGGACAAGTCATACTTATG 8910 Query 160292 -CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTT 160350 | | |||||| | ||| || || | || || | || | ||||||||| |||| | Sbjct 8909 GCTTGAGGGGAGAGA-ACCAGGGACTTCAGGGATCCTTTGGATGGTGGCCCAGAGGTACT 8851 Query 160351 CGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCA 160410 | || ||||| |||||||||| | ||| |||||||||| | ||| || | | Sbjct 8850 CATCTGGGCTATACGTGTCCTGTGCCCACTCCATGAACTTTTGGATGTTCCCATTTTCTA 8791 Query 160411 GAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTA 160470 | || | || || || | || |||||||| || ||||| ||||| | || Sbjct 8790 GCACATAGCCTACATATTCCCTACTGACCACAAAGTAGGCACTGCCTGAGAAAAGAGGAG 8731 Query 160471 TGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | | | |||||| | ||||| || || ||||| | || | || | || | | Sbjct 8730 TTGTGAGGGGCGGCTGGGCTTTGGCCACCCCAGTGTTCGTCAGCTTCCCATCGACAACGG 8671 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 |||||| ||||||||||| || ||||| || ||||| || || || || ||| Sbjct 8670 TGTGTCGTTTCTTCCACCTTTCCTCCTTGTTTGGAGGCATCTTCTCAGTTTCCAGGTTGT 8611 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | |||| || || ||||| | | |||| || || ||||| || || | || |||| Sbjct 8610 TTTCACCCAGGAATGACTTCAGTTTCCTGACCATTTCCAGGTTGGTTTTAATAGGGAAGT 8551 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710 | | || || | ||| |||| ||||||||| || || |||| | || ||||||| ||| Sbjct 8550 CCATCCCACAAAGGTTGATCAAGTACTTCCAGTTTGCACTCATGCTGTACAGGTCCTTCA 8491 Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770 |||| || | ||| ||||| || || |||||||| || || || |||||||| || | | Sbjct 8490 TGCAGTTGAGATCAGCCTGAACCCGACTCCAGGACGCATAAACGACGTTCTCCAGCTGGC 8431 Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCT 160830 |||||||||||||||| | || || ||| | || |||| ||| || || || || Sbjct 8430 TGGCCACAAAGACGTTCTTCAAGCAGGACGCAATGCCCATCACTGCGGCTAAAAAGGGCT 8371 Query 160831 TATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGA 160890 || || ||| ||||||||| | |||||| | ||||||||| ||||||||||| | Sbjct 8370 CCTCTGCTTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCATATAGATGGCCCTCA 8311 Query 160891 GCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACT 160950 | | ||| || | ||| || || || ||||| | ||| | || || || || ||||| | Sbjct 8310 GGAGCCTTTCAAGCATTTCAATTTTGTGATGAACCACTACGGAATACGCGATGGGAAAGT 8251 Query 160951 CGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCAC 161010 | |||||| ||| |||| | | | || || ||| || |||| ||| | ||| Sbjct 8250 CTACCTCCTCTTTACTAAGGGGCTCTACAATATATTTGCGCATCCTGATGAAAGAGGCAC 8191 Query 161011 AATCCCGCGTCATGTTGATATA 161032 | || || |||||||| ||||| Sbjct 8190 AGTCACGGGTCATGTTTATATA 8169 >seq42097 Length=16859 Score = 143 bits (158), Expect = 3e-29 Identities = 627/985 (64%), Gaps = 28/985 (3%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| ||||| || || |||||| ||| ||| || ||||| || Sbjct 7044 CAGATGCTCATCCAAACACTGGACAGCAAAGGGGTCAACATCTATGTCAAACTTATTGGC 6985 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||| | ||||| || || || |||||| || ||| || | ||||| | ||| | Sbjct 6984 GAAGAAGTGGTGT---TTGTGAAGTATCCAGCTCAAGTCACCAGCTCCGAAAATGCACAG 6928 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| | | || || | | |||| |||| | || || ||||| Sbjct 6927 GGAGCACACATGGACACAG----------------GAGCATCTTTGGAAACATCGCCTTC 6884 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCC-TGCATGTCGGAGGTGTCGTATTTGT 160290 ||||||| || || |||||||| || | || | ||||||||| ||| || || | Sbjct 6883 AAAGTACTGTCATTTGACAAACCTAGCGACAGCAATTCATGTCGGACAAGTCATACTTAT 6824 Query 160291 A-CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGT 160349 | | |||||| | ||| | || | || || | || | ||||||||| |||| Sbjct 6823 GGCTTGAGGGGAGAGA-ACCAGAGACTTCAGGGATCCTTTGGATGGTGGCCCAGAGGTAC 6765 Query 160350 TCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCG-ATTAACCTGTCCCG 160408 || || ||||| || ||||||| | ||| ||||||| | | ||| | | | | Sbjct 6764 TCATCCGGGCTATATGTGTCCTGTGCCCACTCCATGAGATTTGGATATTCTCATTTTCT- 6706 Query 160409 CAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG 160468 || || | || || ||| | || |||| ||| || ||||| || || | || Sbjct 6705 -AGCACATAGCCTACATATTCTCTACTGACTACAAGGTAGGCACTGCCTGAAAAAAGAGG 6647 Query 160469 TATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAG 160528 | | | || || ||||| || | ||||| | || | || | || | Sbjct 6646 AGTTGTGAGTGGGGGTTCTGCTTTGGCCACCCGAGTGTTTGTCAGCTTCCCATCAACAAT 6587 Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTGC-GGTGGCATGCGTTCCGTCTCTAGAC 160587 | ||||| || |||||||| | ||| | || |||| || || || | Sbjct 6586 GGTGTGTCATTTTTTCCACCTTTCTTCCTTTTTTTGGAAGCATCTTCTCAGTTTCCAAGT 6527 Query 160588 TGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAA 160647 |||| | || || || || | | | |||| || || ||||| | || | | | Sbjct 6526 TGTTTTCGCCCAAGAATGACTTGAATTTCCTGACAATTTCCAGGTTGTTTTTAAAAAGGA 6467 Query 160648 AGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCC 160707 || ||| ||| | ||| |||| |||| |||| || | |||| | || ||||||| Sbjct 6466 CATCCATACTGCAAAGGTTGATCAAGTACATCCAGTTTTCACTCATGCTGTACAGGTCCT 6407 Query 160708 TCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTT 160767 |||| || | | || ||||| || | |||||||| | || | |||||||||| | Sbjct 6406 TCATACAGATGAGGTCAGCCTGAACCCAACTCCAGGACACATAAGCGACGTTCTCTAACT 6347 Query 160768 TACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACA 160827 |||||||||||||| || | || || || | || |||| |||||| || || Sbjct 6346 GGCTGGCCACAAAGACATTCTAAAAGCAAGATGCAATGCCCATCACCGCGGCTAAAAAGG 6287 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 || || || |||| || |||| | | |||||| | ||||||||| |||||||||| Sbjct 6286 ACTCCTCTGCTTTTCTGTTCACGCGAATGCAATAGAAATTCTGAGGCATATAGATGGCCC 6227 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| || | ||| || |||| ||||| | ||| || || || || | |||| Sbjct 6226 TCAGGAGCCTGTCAAGCATTTCAGTCTTGTGATGAACCACTATGGAATATGCAGTTGGAA 6167 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 | | |||||| ||| |||| | | | || || || | ||| | ||| | Sbjct 6166 AGCCTACCTCCTCTTTACTAAGGGGCTCTACAATATATTTGTGCAT-TTG-TGAAAGAGG 6109 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 ||||||| || |||||||| ||||| Sbjct 6108 CACAATCACGGGTCATGTTTATATA 6084 >seq39551 Length=14816 Score = 93.3 bits (102), Expect = 5e-14 Identities = 542/859 (63%), Gaps = 15/859 (2%) Strand=Plus/Plus Query 160120 GGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTA 160179 ||||| |||||| || |||||||||| ||| || ||||| | | ||||| | || Sbjct 6729 GGTGATGGTTCTGAAGTATCCAGTGCAGGTCCCCAGACCCATAAATACAGACAGCCCGCT 6788 Query 160180 TGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACT 160239 ||| || || ||||| | ||| | || || | | | | ||| || || | || || Sbjct 6789 GGTGGACTCCTGAACAAGGTGTGTAAGGCGCCCCATCCTCAATGTCTCCCTCATGGTCCT 6848 Query 160240 GCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGG 160299 ||||||| | ||| || || || |||||| ||| ||| ||||| || || Sbjct 6849 GCCACTTGGTTAGCCTTGCAATAGCTCTCATGTCTGAGAGGTCAAATTTGGGGTGCAAGG 6908 Query 160300 GAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGC 160359 || | | || || | | || ||| || ||||||||||| ||||| || || || | Sbjct 6909 GAGCTGATCCAGGCATCCAGGAGGCACGTTGGAGGGTGGCCCAAAGGTGCTCATCAGGAC 6968 Query 160360 TGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAGAACGTGAG 160419 |||| ||||| || | |||||| || | | | | | || | || || Sbjct 6969 TGTAGGTGTCTTTTGCCCATTCAATTAGTTGTTGGGCTTTGGCGTTGTTTAATACATGTT 7028 Query 160420 TAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAG 160479 || | || || | | || | ||| || | || | || || | |||| ||| Sbjct 7029 CAATGAAGTCTCGAGAAGCCACCATGTAGGCATTCCCAGTAAACATGGTTATGTTATTAG 7088 Query 160480 GCGG-CGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGCGTGTCGC 160538 |||| | |||||| || || | ||| || ||| ||||||| | | | | Sbjct 7089 GCGGAGGGGTCTTTCTCTTG-CTGGTCTTGTACAATGTGTCTTTCAC---CTCATAGTGA 7144 Query 160539 TTCTTCCA-CCTGACCATCT-TGT-GCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCA 160595 | ||||| | |||| | | ||| | ||||| | || | ||| | |||||| Sbjct 7145 TATTTCCAGCGGGACCTTTTATGTGGGGGTGGTA---CCTCTGACTCCATACTGTTCTGC 7201 Query 160596 CCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTA 160655 || | || || || || ||| ||||| || ||||||| |||||||| || Sbjct 7202 CCATTCAGTAGCTTGAGGGCCTGGACCATCTCAGCATTGGTCTTGATGGGAAAGTCTGTC 7261 Query 160656 CCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTC--GTGCAGGTCCCTCATGC 160713 || || ||| | | ||| ||||| | || | ||||| | | | ||| ||||| Sbjct 7262 CCACAGGTGTTCAGGAGGTATTTCCA--TGGCACGGAGGTCTGGAGTAAGTCTTCCATGC 7319 Query 160714 AATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGG 160773 | || | || |||||||| | | ||||||||| || || || | | || ||||| | Sbjct 7320 AGTTCAGGTCAGCCTGCACCCTGGACCAGGAAGCATAGACCACTGACACCAGCTTACTAG 7379 Query 160774 CCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTAT 160833 | | |||||| || ||| || ||||| || || || ||| | ||| | | Sbjct 7380 CTATAAAGACATTTGGGAAGCATGACACAATGGCCCTGACTGCCTGCTTGAAAGTTTCTG 7439 Query 160834 CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCA 160893 | |||| | |||||||| || || || | ||||||||| | ||| | || | |||| Sbjct 7440 GGGACTTTTGATCCACGTGGACACAGTATATGTTCTGAGGGGTGTACACAGCGCGCAGCA 7499 Query 160894 ACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGG 160953 ||| || || |||| ||||| | ||| | ||| || || || || || || || |||| Sbjct 7500 GCCTTTCAAAGTTCTCGATCTTCTCATGAACCACCATGGAATACGCAATGGGGAAGTCGG 7559 Query 160954 TCTCCTCGCGACTCAGGGA 160972 ||| || |||||| || Sbjct 7560 CCTCTTCTTTACTCAGCGA 7578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574690546989600