Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq149419 158 1e-32 seq132141 158 1e-32 seq96221 158 1e-32 seq171704 149 8e-30 seq218559 143 3e-28 seq103442 122 1e-21 seq41044 107 2e-17 seq129986 98.7 1e-14 seq99782 95.1 1e-13 seq55738 95.1 1e-13 seq125977 91.5 2e-12 >seq149419 Length=3911 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||| | |||||| | || Sbjct 3840 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGCACCTCGCGGGACGTGA 3781 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 3780 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAA 3721 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 3720 TATCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCAGTGTCGGGGT 3661 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 3660 GCACCTGCTTCAGCACCTTGTA 3639 >seq132141 Length=4835 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||| | |||||| | || Sbjct 253 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGCACCTCGCGGGACGTGA 194 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 193 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAA 134 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 133 TATCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCAGTGTCGGGGT 74 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 73 GCACCTGCTTCAGCACCTTGTA 52 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||| | |||||| | || Sbjct 4583 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGCACCTCGCGGGACGTGA 4642 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 4643 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAA 4702 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 4703 TATCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCAGTGTCGGGGT 4762 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 4763 GCACCTGCTTCAGCACCTTGTA 4784 >seq96221 Length=7311 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||| | |||||| | || Sbjct 7240 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGCACCTCGCGGGACGTGA 7181 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| ||||||| || ||||||| |||| | Sbjct 7180 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAGGCCTCGCTGGCGATGCGCTCGAAAA 7121 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 7120 TATCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCAGTGTCGGGGT 7061 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 7060 GCACCTGCTTCAGCACCTTGTA 7039 >seq171704 Length=2901 Score = 149 bits (164), Expect = 8e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||||||||| || | || Sbjct 2225 GCTTGGCCAGCTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGGATCTCCCGGGACGTGA 2284 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| |||||||| |||| | Sbjct 2285 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCCCGATGCGCTCGAAGA 2344 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||| ||||||| ||| | |||| |||||||| |||||||| Sbjct 2345 TGTCGTTGACGAACGAATTCATGATGCCCATGGCCTTGGAAGAGATGCCGGTGTCGGGGT 2404 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||||| ||||||||||| | | || |||||| Sbjct 2405 GGACCTGCTTTAGCACCTTGTACACGTACACCGAGTA 2441 >seq218559 Length=2076 Score = 143 bits (158), Expect = 3e-28 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 1210 GCTTGGCCAGCTCCCCGGGCAGCAACAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 1269 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 1270 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 1329 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||| || |||||||| Sbjct 1330 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGATMCCGGTGTCGGGGT 1389 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||||| ||||| ||||| | | || |||||| Sbjct 1390 GGACCTGCTTCAGCACRTTGTACACGTACACCGAGTA 1426 Score = 131 bits (144), Expect = 2e-24 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| || ||| ||| | ||| |||||||| ||||||||||| || | ||| || Sbjct 195 GCCAACTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTC 136 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| | |||||||| || |||||| ||||||| |||| |||||| Sbjct 135 GAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCG 76 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| ||||||||||||| ||| | |||| |||||||| ||||||||| ||| Sbjct 75 TTGACGAACGAGTTCATGATACCCATGGCCTTGGAAGAGATGCCGGTGTCGGGGTGGACC 16 Query 1254528 TGCTTGAGCACCTTG 1254542 ||||| ||||||||| Sbjct 15 TGCTTCAGCACCTTG 1 >seq103442 Length=6735 Score = 122 bits (134), Expect = 1e-21 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| || | || Sbjct 4905 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGAGACGTGA 4964 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 4965 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGYTCGAARA 5024 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 5025 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCGGTGTCGGGGT 5084 Query 1254523 GCACC 1254527 | ||| Sbjct 5085 GGACC 5089 Score = 113 bits (124), Expect = 5e-19 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 1254410 GCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTT 1254469 ||||||||| | |||||||| || |||||| ||||||| |||| |||||||| Sbjct 5094 GCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTT 5153 Query 1254470 GACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1254529 ||| ||||||||||||| ||| | |||| |||||||| ||||||||| ||||| Sbjct 5154 GACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGATGCCGGTGTCGGGGTGGACCTG 5213 Query 1254530 CTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 ||| ||||||||||| | | || |||||| Sbjct 5214 CTTCAGCACCTTGTACACGTACACCGAGTA 5243 >seq41044 Length=14481 Score = 107 bits (118), Expect = 2e-17 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||||||||| ||||||||||| || | ||| || |||||||| | ||||| Sbjct 8571 CAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAACGCTTGTTGTAATGCGC 8630 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 || ||| |||||| ||||||| |||| |||||||| || || |||||||||| Sbjct 8631 CAAGCGGGAAGCCTCGCCTGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCATGAT 8690 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | ||| || |||||| ||| || ||||| ||||| ||||||||||| Sbjct 8691 GCCCATGGCTTTGGACGAAATGCCCGTGTCCGGATGCACTTGCTTCAGCACCTTGTA 8747 >seq129986 Length=6109 Score = 98.7 bits (108), Expect = 1e-14 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 ||||||| |||| ||||||||||| ||||||||||||| ||| | |||| |||| Sbjct 1065 CGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGA 1006 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||||||| |||||||| ||||||||||| | | || |||||| Sbjct 1005 TGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 954 >seq99782 Length=7013 Score = 95.1 bits (104), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || || ||| | ||||| |||||| |||||||||| || | ||| || Sbjct 6278 GCCAGCTCACCCGGCAGCAGCAGGCACACGGCCATCTGGATCTCCCGGGACGTGATAGTA 6337 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||| || | |||||||| || || ||| |||||| | || ||||| Sbjct 6338 GAACGCTTATTGTAATGCGCCAGGCGCGAAGCTTCGCCTGAGATGCGTTTGAAGATGTCA 6397 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||||||||||||||||| || | |||| || |||||| ||||||||||| | Sbjct 6398 TTGACAAACGAGTTCATGATGCCCACGGCCTTGGACGAAATGCCCGTGTCGGGGTGCAAC 6457 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| | ||| ||||| Sbjct 6458 TGCTTCAACACTTTGTA 6474 >seq55738 Length=16555 Score = 95.1 bits (104), Expect = 1e-13 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 869729 ACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCG 869788 || ||||| || || || || || || ||||||||||| ||||| || | |||||| Sbjct 6649 ACTATGCCATCACTCGCCGCAAAGAATGCCAGGACGTGAGATATAAAATGTCTCTCGTCC 6590 Query 869789 TCGCTGAGCGACACCCAGTGGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAG 869848 | |||| ||||||| | || | ||||||||||||||| || |||||| Sbjct 6589 GGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCTCCTCAGCCGTCCAG 6530 Query 869849 ATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGG 869908 | ||||||||||| || |||||||||| ||| | | ||||| ||| || |||| Sbjct 6529 AAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGATGGGAAAGACC 6470 Query 869909 ACAAAGCGGTTGGGGTTGTC 869928 || |||||| ||| || || Sbjct 6469 ACGAAGCGGCGGGGATTTTC 6450 >seq125977 Length=8618 Score = 91.5 bits (100), Expect = 2e-12 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 869729 ACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCG 869788 || ||| | || || || || || ||||||||||||| ||||| || | ||||||| Sbjct 4422 ACTATGACATCACTCGCCGCAAAGAAAGCCAGGACGTAAGATATAAAATGTCTCTCGTCG 4363 Query 869789 TCGCTGAGCGACACCCAGTGGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAG 869848 | | || | ||||||| | || | ||||||||||||||| || |||||| Sbjct 4362 TGTTTCAGTGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCTCCTCAGCAGTCCAG 4303 Query 869849 ATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGG 869908 | ||||||||||| || |||||||||| ||| | | ||||| || || |||| Sbjct 4302 AAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTCAATGGGAAAGACA 4243 Query 869909 ACAAAGCGGTTGGGGTTGTC 869928 ||||| ||| ||| || || Sbjct 4242 ACAAAACGGCGGGGATTTTC 4223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6078378811195820