Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq141308 91.5 1e-13 seq106596 87.8 2e-12 seq68848 87.8 2e-12 >seq141308 Length=4330 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || || || || || || || || || || || || Sbjct 4062 ACAATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCC 4121 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||| ||||| ||||| || || || || Sbjct 4122 AGTGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGAC 4181 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | |||||||||| || || |||||||| ||| | | | |||| || || Sbjct 4182 CAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTAC 4241 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| || || || || || || ||| |||| |||| Sbjct 4242 AACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCG 4279 >seq106596 Length=6504 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||||| | || || || || || || || || || || || ||| ||| Sbjct 5325 GATGCAGATCTTTATGCAGACCCTGACAGGCAAGACCATCACCCTGGAGGTTGAACCCAG 5384 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | ||| || |||||||||||||||| | || || || || || || Sbjct 5385 AGACACTATTGAGAAGGTCAAGGCAAAGATCCAAGACAAAAAGGGCATTCCCCCTGACCA 5444 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||| || || |||||||| ||| | | | |||| || || || Sbjct 5445 GCAGAG-GGAATCTTTGCAGGCAAGCAGCTGGAAGATGTCTGCACCCTGTCTGACTACAA 5503 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || || || || | | |||| Sbjct 5504 GATCCAGAAAGAGTCCACCCTGCTCCTGGT 5533 >seq68848 Length=10048 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || | || || || || || || || || | ||| Sbjct 7491 ATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCAAGCCCAGT 7432 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||| ||||| || || || || || Sbjct 7431 GACACCATCGAGAATGTCAAGGCCGAGATCCAAGACAAGGAAGGCATCCCACCTGACCAG 7372 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| ||||| || || |||||| ||||| | | | |||| || || ||| Sbjct 7371 CAGAGGCTGATATTTGCAGGCAAGCAGCTGTAGGATGACTGGACCCTGTCCGACTACAAC 7312 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| || || || | ||||||||| | || |||| || ||| Sbjct 7311 ATCCAAAA-GAGTCCACTTTGCACTTGGTGCTTCGTCTGCGTGGCGGC 7265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447926711088800