Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq141308 143 2e-29 seq68848 100 2e-16 seq93163 98.7 6e-16 seq66926 98.7 6e-16 seq106596 86.0 4e-12 >seq141308 Length=4330 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | |||||||||||| | |||| ||| ||||| ||||| ||||| || Sbjct 4291 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 4232 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 4231 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4172 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || |||||| | || | ||| ||| |||||| Sbjct 4171 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACC 4112 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 4111 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 4065 >seq68848 Length=10048 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| ||| || || ||||| ||||| || ||| | | ||||| Sbjct 7281 AGCACCAAGTGCAAAGTGGACTCTTT-TGGATGTTGTAGTCGGACAGGGTCCAGTCATCC 7339 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 | ||| ||||| || || || ||||| | |||||||| | || | || |||||||| Sbjct 7340 TACAGCTGCTTGCCTGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 7399 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || | ||||| || || || | ||| ||| || ||| |||| || |||| Sbjct 7400 TGGATCTCGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTTGACCTCAAGAGTGATGG 7457 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| ||| | |||||||| ||||||||||||||| Sbjct 7458 TCTTGCCCATCAGGGTCTTCACAAAGATCTGCATG 7492 >seq93163 Length=7565 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | |||| ||| ||||| ||| | || || || || || | |||| Sbjct 7023 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCAGAGAGAGTGTGGCCATCT 7082 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCA---CCCCCTCCTTG 34882 ||||| ||||| || | ||||| ||| | |||||||| | |||| ||||| ||| Sbjct 7083 TCCAGCTGCTTGCCCACAAAGATGAGTGGCTGCTGGTCGCGGGGCAGGGTGCCCTCTTTG 7142 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || |||| | ||| ||| ||| || || | ||| ||| Sbjct 7143 TCCTGGATCTTGGCCTTAACATTCTCTATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 7202 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || |||||||| || ||||| ||||| Sbjct 7203 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 7237 >seq66926 Length=10282 Score = 98.7 bits (108), Expect = 6e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | |||||||||||| | |||| ||| ||||| ||||| ||||| || Sbjct 10107 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 10166 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | |||||||| | || Sbjct 10167 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10226 Query 34871 ACCCCCTCCTTGTC 34884 | || |||||||| Sbjct 10227 ATGCCTTCCTTGTC 10240 >seq106596 Length=6504 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/213 (69%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||| | | |||| ||| ||||| || || ||||| || ||| ||| |||| Sbjct 5536 AGAACCAGGAGCAGGGTGGACTCTTTCTGGATCTTGTAGTCAGACAGGGTGCAGACATCT 5477 Query 34826 TCCAGTTGCTTTCCGGCGAAGAT-CAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || ||||| | || |||||||| | || | |||| ||||| Sbjct 5476 TCCAGCTGCTTGCCTGCAAAGATTCCCTC--TGCTGGTCAGGGGGAATGCCCTTTTTGTC 5419 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||| ||||| | || | || ||| || || || | ||| ||||| Sbjct 5418 TTGGATCTTTGCCTTGACCTTCTCAATAGTGTCTCTGGGTTCAACCTCCAGGGTGATGGT 5359 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || ||||||| | |||||||||||| Sbjct 5358 CTTGCCTGTCAGGGTCTGCATAAAGATCTGCAT 5326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324301690734740