Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq250925 192 1e-44 >seq250925 Length=660 Score = 192 bits (212), Expect = 1e-44 Identities = 307/432 (71%), Gaps = 14/432 (3%) Strand=Plus/Minus Query 18653 GAACCATGCCGACGCTTACTGTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGA 18712 ||||||||||| || | ||| || ||||| |||||||| || || | || ||| Sbjct 553 GAACCATGCCGGCGGATCGGGTTGTAGAACATCTCGATGTAGTCGAACACGTC----CGA 498 Query 18713 -GCTTCT-TCTCGCGTTCCG--TAGATCTTTTTCTTTATCCGTTCACGTTTCAGTA-GCT 18767 ||| | | ||||| || |||||| | ||| ||||| || |||| | ||| Sbjct 497 TGCTGCCATGGCGCGTGTCGGGTAGATCCGTCGCTTGATCCGCTCCTTCTTCAAGACGCT 438 Query 18768 GGAAAAAACTTTCTGCGACTGCGTTGTCATGACAGTTACCGCGACGGCTCATACTGCCCT 18827 | || ||||| ||||| || || ||||| || ||||| |||||||| ||||| || | Sbjct 437 G-AAGAAACTCTCTGCAACGGCATTGTCGTGGCAGTTCCCGCGACGACTCATGCTCGGCA 379 Query 18828 CCAGCCCGTGTGATTTCAGGAACGACTGCCACTCATAGCTTGTGTACTGACTGCCTTGAT 18887 ||| || ||| | |||||||||||||||||| || ||| ||| |||||| ||| |||| Sbjct 378 CCATCCGGTGCGCTTTCAGGAACGACTGCCAATCGCTGCTGGTGAACTGACAGCCCTGAT 319 Query 18888 CAGAATGAACCAGCACCTGCTTTTG--AGGATTACGTCGCCACACGGCCATCAGAAGTGC 18945 | ||||| |||||||| || | | || || || ||||| | ||| || || || Sbjct 318 CCGAATGCACCAGCAC--GCCTGGGCCCGGCTTGCGCCGCCAAGCCGCCGCCACCAGCGC 261 Query 18946 ATTCAGGACAATATCCTTTGTCATCCGGGGCTGCATTGACCAGCCAATAACTTTGCGCGA 19005 | ||| || | ||| | |||||| ||| | | | |||||| | | | |||||| Sbjct 260 CTGCAGCACCAGATCGCTGGTCATCGTCGGCGCCGTCGCCCAGCCCACGATCTGGCGCGA 201 Query 19006 GAACAGGTCAACAACCACAGCCAGATACAGCCAGCCTTCGTGAGTCCGGATGTAGGTGAT 19065 ||||||| | || | ||||| ||||||| ||||||| ||| |||||||||||||| Sbjct 200 ATACAGGTCCATCACTGCCGCCAGGAACAGCCAACCTTCGTAAGTGCGGATGTAGGTGAT 141 Query 19066 GTCCGTTACCCA 19077 |||||| ||||| Sbjct 140 GTCCGTGACCCA 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126575029694400