Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq23225 89.7 4e-12 seq10859 89.7 4e-12 >seq23225 Length=19588 Score = 89.7 bits (98), Expect = 4e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| || ||||| || || ||||| ||||||||| | || || | ||||| Sbjct 4519 TGTTGTAGCTACTATAGCTTTCGGAATGGGCATTAATAAAGCCGACATTCGCAAAGTTAT 4460 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || ||||| ||| | || ||| ||||| || ||||| |||||||| || || Sbjct 4459 TCATTATGGCGCTCCTAAGGAAATGGAATCCTATTACCAGGAAATCGGTAGAGCTGGCCG 4400 Query 131296 TGATGGA 131302 |||||| Sbjct 4399 GGATGGA 4393 >seq10859 Length=27024 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| || ||||| |||| |||||||||||| || || || ||||| || | ||| Sbjct 13548 TTCTTATCTAGTCCATAGGCAATAGCAGCAGCAGTCGGCTCGTTGATAATCCTAAGGACA 13489 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| |||| |||||||| || || || | || || || || || || Sbjct 13488 TTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCCTGCCGCTGGGAGTCATTGAAGTAG 13429 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || || || | || |||| Sbjct 13428 GCTGGCACTGTGACCACAGCAT 13407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3723424295043960