Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq141308 132 9e-26 seq106596 113 9e-20 seq57751 102 2e-16 seq31296 100 6e-16 seq271237 96.9 7e-15 seq78041 87.8 4e-12 seq148632 86.0 1e-11 >seq141308 Length=4330 Score = 132 bits (146), Expect = 9e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || |||||||| || || || || || || | | || Sbjct 4279 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 4220 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || || |||||||| || || || || || || || || |||||||| Sbjct 4219 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTG 4160 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || || || || ||| | || || || |||| || || Sbjct 4159 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATG 4100 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||||||||||| ||||| || || ||||||||| Sbjct 4099 GTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATT 4064 >seq106596 Length=6504 Score = 113 bits (124), Expect = 9e-20 Identities = 153/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| | | |||| || || |||||||| || || || ||||| || | | | ||| Sbjct 5536 AGAACCAGGAGCAGGGTGGACTCTTTCTGGATCTTGTAGTCAGACAGGGTGCAGACATCT 5477 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || || || ||||||||| || || || || || || || || | || ||| Sbjct 5476 TCCAGCTGCTTGCCTGCAAAGATTCC-CTCTGCTGGTCAGGGGGAATGCCCTTTTTGTCT 5418 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || |||||||| || || || ||||| || || | ||||| || |||| || || ||| Sbjct 5417 TGGATCTTTGCCTTGACCTTCTCAATAGTGTCTCTGGGTTCAACCTCCAGGGTGATGGTC 5358 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| |||| | ||| |||||||| Sbjct 5357 TTGCCTGTCAGGGTCTGCATAAAGATCTGCAT 5326 >seq57751 Length=11510 Score = 102 bits (112), Expect = 2e-16 Identities = 159/226 (70%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 82586 TCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAG 82645 ||||| || | | || || | |||||| || ||||||||||| || | | |||||| || Sbjct 10670 TCCTC-CAGATGAAGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTCGTGATCAGAAAG 10728 Query 82646 AATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTAT 82705 | | ||| |||| || || || ||||||||| | | ||||| || || ||||| Sbjct 10729 AGTGTAACCACCTTCCGACTGCTTGCCTGCAAAGATTTGCTTCTGTTGGTCAGGGGGTAT 10788 Query 82706 TCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTC 82765 || || ||||| |||||||| | || ||||| ||||| | | | | || || || || Sbjct 10789 GCCCTCTTTATCCTGAATCTTGACCTTCACATTCTCAATGGCGTTACTGGGCTCCACCTC 10848 Query 82766 CAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || |||||| ||| ||||| ||||| || |||||| Sbjct 10849 TAGGGTAATGGTCTTGTGGGTCTGGGTCTTCACAAAGATTTGCATT 10894 >seq31296 Length=16870 Score = 100 bits (110), Expect = 6e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || || |||| | | | | || ||||| || || Sbjct 14470 TGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGTACGGCCATCTTCCAGCTGC 14529 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||| ||||| || || || ||||| ||||| |||||||||||||| | ||||| Sbjct 14530 TTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCCGGATCTTG 14589 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || |||||||| || || || || || || || | || || || || ||||| Sbjct 14590 GCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACCTCGAGCGTGATGGTTTTCCCTGTA 14649 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 14650 AGGGTCTTCACGAAAATCTGCAT 14672 >seq271237 Length=352 Score = 96.9 bits (106), Expect = 7e-15 Identities = 149/213 (70%), Gaps = 11/213 (5%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || || ||||| | | | | || ||||| || || Sbjct 21 TGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGC 80 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || || || ||||| ||||| |||||||||||||| || ||||| Sbjct 81 TTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 140 Query 82728 GCTTTTACATTTTCAATCGTATCATT----------AGGTTCTACTTCCAAAGTTATCGT 82777 || || ||||||| || | ||||| ||||| || || | || || || Sbjct 141 GCCTTGACATTTTTTTTC-TGTCATTTAGTGTCCGAGGGTTCAACCTCAAGCGTGATGGT 199 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | ||||| || || |||||||| Sbjct 200 TTTCCCCGTAAGGGTCTTCACTAAAATCTGCAT 232 >seq78041 Length=9000 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||||| | |||| ||||| | || || || ||||| ||||||||||| Sbjct 8493 GCCTTATGGTGGTACTTTGTATCAAAAGGAGTGGAGTATTTGGATACCGTGTTTTTCATC 8552 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || || ||||| ||| | ||||| || ||||| | || ||||| Sbjct 8553 CTGAGGAAGAAAAACAACCAGGTCTCTTTCCTTCACGTGTACCATCACTGCACCATGTTC 8612 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || | | ||| | || ||||| ||| | || || || |||| Sbjct 8613 ACACTGTGGTGGATCGGAATTAAGTGGGTGGCAGGCGGCCAAG 8655 >seq148632 Length=3950 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||||||||| || | || ||||| ||| | |||||||||||| Sbjct 305 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGACGAATTCCTTCCTTA 246 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || |||||||| || || || ||||| || || | | || Sbjct 245 TCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCATGATG 186 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | | ||||| | || |||||||| Sbjct 185 GTTTTCCCCATAAGGGTCTTCATGAAAATCTGCAT 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 977418532005940