Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq141308 145 7e-30 seq93163 113 4e-20 seq68848 111 2e-19 seq31296 111 2e-19 seq106596 105 6e-18 seq66926 102 8e-17 >seq141308 Length=4330 Score = 145 bits (160), Expect = 7e-30 Identities = 153/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 4262 GGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 4204 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || ||||||||||||||||| |||||| || Sbjct 4203 CTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCT 4144 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| || || | ||||| ||| ||||| ||||| | Sbjct 4143 TGACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGG 4084 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 4083 TCTTCACGAAGATCTGCAT 4065 >seq93163 Length=7565 Score = 113 bits (124), Expect = 4e-20 Identities = 148/202 (73%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||||| | ||| | | | || || |||||||||| Sbjct 7037 GGTGGACTCTTTCTGGATGCTGTAATCAGAGAGAGTGTGGCCA-TCTTCCAGCTGCTTGC 7095 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGA---TGCCTTCCTTGTCGGTGATCTTTT 133578 || | | ||||| ||||||||||| | || | |||| || ||||| |||||| Sbjct 7096 CCACAAAGATGAGTGGCTGCTGGTCGCGGGGCAGGGTGCCCTCTTTGTCCTGGATCTTGG 7155 Query 133579 GCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 ||| | | ||| | ||||| |||||||||| || | ||||| ||| |||||||||| Sbjct 7156 CCTTAACATTCTCTATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCA 7215 Query 133639 GAGTTTTTACGAAAATCTGCAT 133660 | || || ||||| || ||||| Sbjct 7216 GGGTCTTCACGAAGATTTGCAT 7237 >seq68848 Length=10048 Score = 111 bits (122), Expect = 2e-19 Identities = 144/198 (73%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||||||||| || || ||||| ||| || || | |||| ||||||||||| Sbjct 7296 GTGGACTCTTT-TGGATGTTGTAGTCGGACAGGGTCCAGTCATCCTACAGCTGCTTGCCT 7354 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || ||||||||||||||||| ||||| |||| Sbjct 7355 GCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTCGGCCTTG 7414 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||| || || | |||| ||| ||||| |||| || Sbjct 7415 ACATTCTCGATGGTGTCACTGGGCTTGACCTCAAGAGTGATGGTCTTGCCCATCAGGGTC 7474 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 7475 TTCACAAAGATCTGCATG 7492 >seq31296 Length=16870 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| || || || ||||| || || || | | | || || |||| Sbjct 14469 ATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGTACGGCCA-TCTTCCAGCT 14527 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| | | | || |||| |||||| || ||||| || |||||||| || ||||| Sbjct 14528 GCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCCGGATCT 14587 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | || | ||||| | |||||| || |||| |||| |||||| || | Sbjct 14588 TGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACCTCGAGCGTGATGGTTTTCCCTG 14647 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || |||||||||||||| Sbjct 14648 TAAGGGTCTTCACGAAAATCTGCAT 14672 >seq106596 Length=6504 Score = 105 bits (116), Expect = 6e-18 Identities = 143/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| || || ||| | || || ||||||||||| Sbjct 5522 GGTGGACTCTTTCTGGATCTTGTAGTCAGACAGGGTGCAGACATCTTCCAGCTGCTTGCC 5463 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||| || || ||||| | ||||| ||||||| ||| Sbjct 5462 TGCAAAGAT-TCCCTCTGCTGGTCAGGGGGAATGCCCTTTTTGTCTTGGATCTTTGCCTT 5404 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || || ||||| ||||| |||| || || || | ||||| ||| ||||| ||||| || Sbjct 5403 GACCTTCTCAATAGTGTCTCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCTGTCAGGGT 5344 Query 133643 TTTTACGAAAATCTGCAT 133660 | | || |||||||| Sbjct 5343 CTGCATAAAGATCTGCAT 5326 >seq66926 Length=10282 Score = 102 bits (112), Expect = 8e-17 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 10136 GGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 10194 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || ||||||||||||||||| |||||| || Sbjct 10195 CTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCT 10254 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTC 133609 ||| | ||| | ||||| ||||||| Sbjct 10255 TGACGTTCTCGATGGTGTCACTGGGCTC 10282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481303054330400