Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq41825 259 6e-64 seq42097 107 2e-18 seq35260 100 3e-16 >seq41825 Length=16783 Score = 259 bits (286), Expect = 6e-64 Identities = 590/883 (67%), Gaps = 10/883 (1%) Strand=Plus/Minus Query 162172 TCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGG 162231 || || | |||||| ||||||||||| ||||| || || ||||||||||| || || | Sbjct 9052 TCACCAGCTCCGAAAACGCACACGGAGCGCACATGGACTCCGCTGCACGGTGGGTAAGGA 8993 Query 162232 GCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGC 162291 || || | | ||||| || || |||| |||||||| || ||||||| || ||| | | Sbjct 8992 GCGCCTTTGGAAACATCACCTTCAAAGTACTGCCACTTGACAAACCTAGCGACAGCATTC 8933 Query 162292 ATGTCGGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTC 162351 |||||||| ||| ||||| | ||| || | | ||||| || | || | || Sbjct 8932 ATGTCGGACAAGTCATACTTATGGCTTGAGGGGAGAGAACCAGGGACTTCAGGGATCCTT 8873 Query 162352 TGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAAC 162411 || | || ||||| |||| || ||||| |||||||| |||| | ||||||||||||| Sbjct 8872 TGGATGGTGGCCCAGAGGTACTCATCTGGGCTATACGTGTCCTGTGCCCACTCCATGAAC 8813 Query 162412 TCCCTGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTAC 162471 | || | || | ||| | || || || ||| | || | |||||| Sbjct 8812 TTTTGGATGTTCCCATTTTCTAGCACATAGCCTACATATTCCCTACTGACCACAAAGTAG 8753 Query 162472 GCGCTACC--AGAAAACACGGGTATGCGTATAGGAGGGGGCT---CTTTGTCTTGACCCG 162526 || || || |||||| | | || || | ||| || |||| ||||| | || | Sbjct 8752 GCACTGCCTGAGAAAAGAGGAGT-TGTG---AGG-GGCGGCTGGGCTTTGGCCACCCCAG 8698 Query 162527 TGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGG 162586 |||| | | | || || || || ||||| ||| ||||||| || ||| | | Sbjct 8697 TGTTCGTCAGCTTCCCATCGACAACGGTGTGTCGTTTCTTCCACCTTTCCTCCTTGTTTG 8638 Query 162587 TAGACGGGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCA 162646 || | | || || || || |||| |||| || | |||||| | | |||| Sbjct 8637 GAGGCATCTTCTCAGTTTCCAGGTTGTTTTCACCCAGGAATGACTTCAGTTTCCTGACCA 8578 Query 162647 TCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACT 162706 | || || ||||| |||| || ||||| | || || || || || | || ||||| | Sbjct 8577 TTTCCAGGTTGGTTTTAATAGGGAAGTCCATCCCACAAAGGTTGATCAAGTACTTCCAGT 8518 Query 162707 TAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACG 162766 | | || | | |||||| |||| | ||||| ||||| ||||| || |||||||| | Sbjct 8517 TTGCACTCATGCTGTACAGGTCCTTCATGCAGTTGAGATCAGCCTGAACCCGACTCCAGG 8458 Query 162767 ACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTA 162826 |||| || |||||| |||||| | |||| |||||||| || | || || || | | Sbjct 8457 ACGCATAAACGACGTTCTCCAGCTGGCTGGCCACAAAGACGTTCTTCAAGCAGGACGCAA 8398 Query 162827 TCCCCATCACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATA 162886 | |||||||| || | | || | || ||||| | || ||||| | ||| || | Sbjct 8397 TGCCCATCACTGCGGCTAAAAAGGGCTCCTCTGCTTTTTTGTCCACGTGAATGCAATAGA 8338 Query 162887 GATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTA 162946 ||||||||| |||||||||||||| | || || | ||| || || || || || | Sbjct 8337 AATTCTGAGGCATATAGATGGCCCTCAGGAGCCTTTCAAGCATTTCAATTTTGTGATGAA 8278 Query 162947 CCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGT 163006 |||| | |||||||| ||||| || || ||||||| ||| || | | || || | Sbjct 8277 CCACTACGGAATACGCGATGGGAAAGTCTACCTCCTCTTTACTAAGGGGCTCTACAATAT 8218 Query 163007 ACTTGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTT 163049 | ||||| ||| | || | |||||||| |||||||| Sbjct 8217 ATTTGCGCATCCTGATGAAAGAGGCACAGTCACGGGTCATGTT 8175 >seq42097 Length=16859 Score = 107 bits (118), Expect = 2e-18 Identities = 182/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 162720 GTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGAC 162779 |||||| |||| | |||| | || || ||||| || | |||||| ||| | || |||| Sbjct 6417 GTACAGGTCCTTCATACAGATGAGGTCAGCCTGAACCCAACTCCAGGACACATAAGCGAC 6358 Query 162780 GCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGC 162839 | |||| ||| |||| ||||||||||| | || || || | || |||||||| || Sbjct 6357 GTTCTCTAACTGGCTGGCCACAAAGACATTCTAAAAGCAAGATGCAATGCCCATCACCGC 6298 Query 162840 CAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGC 162899 | | || | || ||||| || | ||| | | ||| || | ||||||||| Sbjct 6297 GGCTAAAAAGGACTCCTCTGCTTTTCTGTTCACGCGAATGCAATAGAAATTCTGAGGCAT 6238 Query 162900 GTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATA 162959 |||||||||||||| | || || | ||| || |||| || || ||||| || ||||| Sbjct 6237 ATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAGTCTTGTGATGAACCACTATGGAATA 6178 Query 162960 CGCTATGGGGAACTCAGCCTCCTC 162983 || | || || | ||||||| Sbjct 6177 TGCAGTTGGAAAGCCTACCTCCTC 6154 >seq35260 Length=15809 Score = 100 bits (110), Expect = 3e-16 Identities = 147/204 (72%), Gaps = 7/204 (3%) Strand=Plus/Minus Query 171524 ACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGA 171583 ||||| |||| || ||| || | |||||||||||||| | || || ||| | || || Sbjct 13377 ACAGTGCCCAGGTATAAAACCTGGCATATCACCTCCT---TCCCAACCTGATTCTTGGGG 13321 Query 171584 TCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGG--TTT 171641 ||||| || |||||||||| || ||||| || ||||| || || || ||| | | | Sbjct 13320 TCTTTGACCCGAAGAATGCTGGTGACAGACGTGGTCCCATTT-GA-GTGGAAGTGACTCT 13263 Query 171642 TAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAG 171701 |||||||| || ||||| | || | | ||||| || |||| ||||| | | Sbjct 13262 CGGTACTATTCTCAATTCCTGTCCCAGTGCCCTTCCAGGCGATGGCAGGGGCTGGGCGGG 13203 Query 171702 CAGTAGCAGAGCAAGTTATGTTTA 171725 |||| ||||||||||| ||||||| Sbjct 13202 CAGTCGCAGAGCAAGTGATGTTTA 13179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575898034016000