Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq31296 105 2e-17 seq271237 98.7 2e-15 seq141308 89.7 1e-12 seq17604 86.0 1e-11 seq177860 84.2 5e-11 seq148632 84.2 5e-11 >seq31296 Length=16870 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| ||||| ||||| | || || || || ||||| | ||| Sbjct 14657 AAGACCCTTACAGGGAAAACCATCACGCTCGAGGTTGAGCCCTCAGACACTATAGAAAAT 14598 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| | || || ||||||||| || || || || || |||||| Sbjct 14597 GTCAAGGCCAAGATCCGGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTTC 14538 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 | || |||||| |||||||||| | |||||| | || |||||| |||| || ||||| Sbjct 14537 CCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGCCTGACTACAACATCCAAAAGGAGTCC 14478 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || ||||||||||| Sbjct 14477 ACCCTTCATCTGGTGTTGAGACTTCG 14452 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || ||||| || ||||| || |||| || ||||||| |||||| Sbjct 14452 CGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGTA 14511 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || | |||||| |||| || ||| Sbjct 14512 CGGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGA 14556 >seq271237 Length=352 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||||||| || || || || || ||||| || || ||| Sbjct 139 AAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAGAGGCTGATCTTTGCTGGCAAG 80 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | |||||| | || |||||| |||| || ||||| || ||||| Sbjct 79 CAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACATCCAAAAGGAGTCCACCCTTCAT 20 Query 206374 CTTGTTTTGAGACTTCG 206390 || || ||||||||||| Sbjct 19 CTGGTGTTGAGACTTCG 3 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || ||||| || ||||| || |||| || ||||||| |||||| Sbjct 3 CGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTA 62 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||||||||| || || ||||| |||| || ||| Sbjct 63 CGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGA 107 >seq141308 Length=4330 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || ||||| |||| || || |||||| |||| Sbjct 4080 AAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAGTGACACCATCGAGAAC 4139 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || || ||| || || || ||||| Sbjct 4140 GTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGAGGCTGATCTTT 4199 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | || || |||| |||||| ||||||||||||| Sbjct 4200 GCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCC 4259 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 4260 ACCCTGCACCTGGT 4273 >seq17604 Length=44301 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| || || ||||| | |||||| || |||| || ||||||| |||||| Sbjct 18808 GAAGTCTCAACACCAGATGAAGGGCAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTAT 18749 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGC 204847 ||||||||||||||||| || || ||||| ||| Sbjct 18748 GGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGC 18714 >seq177860 Length=2647 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCA--AAGT 204810 |||||||||| || || ||||| || ||||| || |||| || ||||||| || |||| Sbjct 2584 GAAGTCTCAACACCAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACACTAAGT 2525 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCC 204848 ||||||||||||||||| || |||||||| |||| Sbjct 2524 ATGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCC 2487 >seq148632 Length=3950 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAG 206256 || ||||| |||| | || || ||| || ||||| | ||| || ||| ||| Sbjct 178 GGGAAAACCATCATGCTCGAGGTTGAACCCTCAGACACTATAGAAAATGTCAAGGCCAAG 237 Query 206257 ATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAG 206316 || || || || ||||||||| || || || | || ||||| || || |||||| Sbjct 238 ATCCAGGATAAGGAAGGAATTCGTCCTGATCAGCAGAAGCTGATCTTTGCTGGCAAGCAG 297 Query 206317 TTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTT 206376 ||||||||| |||||| | || |||||| |||| || ||||| | ||||| || Sbjct 298 CTGGAAGATGACCATACTTTGTCTGACTACAACATCCAAAAGGAGTCCATCCTTCATCTG 357 Query 206377 GTTTTGAGACTTCG 206390 || ||||||||||| Sbjct 358 GTGTTGAGACTTCG 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176514106993660