Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq35260 196 6e-45 seq11430 149 7e-31 seq41226 127 2e-24 seq107316 82.4 9e-11 seq52655 82.4 9e-11 seq32391 82.4 9e-11 >seq35260 Length=15809 Score = 196 bits (216), Expect = 6e-45 Identities = 237/320 (74%), Gaps = 2/320 (1%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||| ||||| ||||| ||||||| |||| || || ||| | | ||| || ||| Sbjct 10839 GTGGTGACGCAGGACGAGAGAAAGCTGCTGCACACACCTGCATCCTTAAGATGTTCTCTG 10898 Query 171132 CAGACT-TCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGA 171190 | ||| || ||||| ||||||| || |||||||||| || | | ||||| Sbjct 10899 AA-ACTATCCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGA 10957 Query 171191 GAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAA 171250 |||||| | |||| ||||||| ||| || || || || ||||| || |||| |||| Sbjct 10958 AAACATGGTCACTTACAGCAAAGCCCATGGAGTTGTAGTACAGCCTGCATATAGAGACAG 11017 Query 171251 GATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTT 171310 | |||||||||| |||| |||||| ||| ||| |||||| || ||||| || ||| | Sbjct 11018 GGTAAACATCACTGAGCTGGGACTCTGGAACACAAGCATCACCTTCTGGAACACAACCCT 11077 Query 171311 AGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGG 171370 || || || || ||||||| || ||||| || || |||| |||||||| ||||| || Sbjct 11078 GGACGATGAAGGCTGCTACATGTGTCTCTTCAATACTTTTGTTTCTGGGAAGATCTCAGG 11137 Query 171371 GGTGGCCTGCCTCACCCTCT 171390 | |||||||||||||||| Sbjct 11138 GACAGCCTGCCTCACCCTCT 11157 Score = 140 bits (154), Expect = 4e-28 Identities = 178/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || || | |||||| |||||||| |||||||| || Sbjct 13133 GTACAGCCCATAGTATTCCTTCACTACAACTATTTTGAAGACCACCTAAACATCACTTGC 13192 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | ||||||||| | ||| || |||||| | ||| ||| |||||| Sbjct 13193 TCTGCGACTGCCCGCCCAGCCCCTGCCATCGCCTGGAAGGGCACTGGGACAGGAATTGAG 13252 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| |||| || | ||| || ||||| || || ||||| ||||| | || | Sbjct 13253 AATAGTACCGAGAGTCACTTCCACTCAAATGGGACCACGTCTGTCACCAGCATTCTTCGG 13312 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||||| |||| | || |||||||| || ||||| || | ||||||| Sbjct 13313 GTCAAAGACCCCAAGAATCAGGTTGGGAAGGAGGTGATATGCCAGGTTTTATACCTGGGC 13372 Query 171633 AATGT 171637 | ||| Sbjct 13373 ACTGT 13377 >seq11430 Length=26483 Score = 149 bits (164), Expect = 7e-31 Identities = 145/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | || |||||||||||| | |||||||| |||||||| Sbjct 7532 CTTTAGGCCTGTGATGTGTGCAATCACGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAA 7591 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||||||||| || || ||||||||||| |||||||| || |||||||| | Sbjct 7592 GGGCACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATT 7651 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 || || || || || || ||| |||||| || ||||| ||||| ||| || || | Sbjct 7652 CGCTACATAGAATTGACAGAGGGCGTGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTGA 7711 Query 147162 GGGGTTC 147168 |||| || Sbjct 7712 GGGGGTC 7718 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||| || ||||||||||| || || ||||| |||||||| || || || |||| Sbjct 12961 GCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTC-GTGC 13019 Query 147343 -GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 ||||| ||| | | ||||| || ||||||| | ||| |||||||| | |||||| Sbjct 13020 AGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCC 13079 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| ||| || || |||| | ||||| ||| Sbjct 13080 TTTGGAGGACAGTTCTTTAGCATTTGTGGATCCC 13113 >seq41226 Length=14440 Score = 127 bits (140), Expect = 2e-24 Identities = 127/167 (76%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| |||||||||| ||||| ||||||||| ||| ||||||| Sbjct 4042 AGGGTTACTTGGGTTGCCAAACCTTGTCAGAAATGATCCAGTTTTACCTGGTAGAGGTGA 3983 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || ||||| || || ||||||||| | |||| Sbjct 3982 TGCCCCAGGCAGAGAACCA------------TGGCCCAGAAATCAAGGAGCATTTGAACT 3935 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| || ||||| |||||||| || | ||||| ||| ||| Sbjct 3934 CCCTGGGAGAGAAGCTGAAGACCCTCAGGAGGCAGCTGCAGCGCTGT 3888 >seq107316 Length=6452 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | |||| | || |||||| | ||||||| || || ||||| Sbjct 3103 GTATTCCCTGGTGTTCATCATTGGCGTGATAGGCAATATCTTGGTGATTCTGGTTCTCAT 3044 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||| ||| || | | |||||||| ||||| ||| |||||||||||| | ||| Sbjct 3043 GCAATACAGGAGACTTCGAAGCATGACCAGCATCTACCTATTCAACCTGGCCATCTCTGA 2984 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | ||| ||| | || || |||||| ||| Sbjct 2983 TCTGGTCTTCCTTTCCACTTTGCCTTTCTGGATTGACT 2946 >seq52655 Length=12312 Score = 82.4 bits (90), Expect = 9e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||||||||| || | ||||| | | || || |||| || || |||| ||| Sbjct 10468 TACTCTCTGGTATTCATCTTTGGTTTTGTGGGGAACATGTTGGTCATTCTCATCCTGATA 10527 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||||| ||| | || ||||||| |||||| |||||||||||||||| | |||| Sbjct 10528 AACTGCAAGAAGCTGAAGAGCATGACCGACATCTACCTGTTCAACCTGGCCATCTCTGAC 10587 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGG 8760 |||| | | |||| ||||| || ||| Sbjct 10588 TTGCTCTTCCTGCTCACTCTCCCATTCTGG 10617 >seq32391 Length=22748 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| ||||| |||| |||| |||||||||||| ||||||| Sbjct 18052 TGGACCTGGCCATGCAGGTGACTGAGGTGATTGCCTACACCCACTGCTGTATCAACCCAA 18111 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||| || ||||| ||||| | ||||| Sbjct 18112 TCATCTATGCCTTTGTTGGCGAGAGGTTCC 18141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580931884944000