Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq31296 120 3e-22 seq271237 113 4e-20 seq148632 111 1e-19 seq141308 109 5e-19 seq177860 100 3e-16 seq106596 82.4 7e-11 seq66926 82.4 7e-11 >seq31296 Length=16870 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||||| ||| | || ||||||||| |||||||| || | | Sbjct 14446 CCACCACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGC 14505 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||||||||| || | || |||| || |||||| || | |||| Sbjct 14506 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGA 14565 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | ||||| | || ||| Sbjct 14566 ATTCCTTCCTTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACC 14625 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | |||||| ||||| || || | || ||||| || |||||||| ||| Sbjct 14626 TCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTGCATCCTG 14676 >seq271237 Length=352 Score = 113 bits (124), Expect = 4e-20 Identities = 177/253 (70%), Gaps = 9/253 (4%) Strand=Plus/Plus Query 35514 CACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGG 35573 |||| | |||||||||| ||| | || ||||||||| |||||||| || | ||| | Sbjct 1 CACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAG 60 Query 35574 TTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGC 35633 | || | || ||||||||||| || ||||| |||| || |||||| || | ||||| | Sbjct 61 TACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTC 120 Query 35634 TCTCCTTGTCCATGATCTTTTGCTTCAGAGT-------TGCCA--CCGTGTCGCTCGATT 35684 ||||| ||| |||||| ||| | | | || || ||||| | || Sbjct 121 CTTCCTTATCCTGGATCTTGGCCTTGACATTTTTTTTCTGTCATTTAGTGTCCGAGGGTT 180 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGTGCG 35744 | ||||| | |||||| ||||| ||||| | || ||||| || |||||||| ||| | Sbjct 181 CAACCTCAAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACTAAAATCTGCATCCTGGTGG 240 Query 35745 CACACACACCACA 35757 ||| ||||||| Sbjct 241 TACAGCCACCACA 253 >seq148632 Length=3950 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||||| ||| | | ||||||||| |||||||| || | | Sbjct 377 CCACCACGAAGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGAC 318 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | || || ||||||||||| || ||||| |||| | |||||| || | | || Sbjct 317 AAAGTATGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGACGA 258 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | ||||| | ||| ||| Sbjct 257 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCAACC 198 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | | |||| ||||| ||| | | || |||| || |||||||| ||| Sbjct 197 TCGAGCATGATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTGCATCCTG 147 >seq141308 Length=4330 Score = 109 bits (120), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 4256 CTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 4197 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | || | || ||||||||| |||||| ||| | | Sbjct 4196 GATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTT 4137 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || || || |||| || ||||| Sbjct 4136 CTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCAC 4077 Query 35725 AAATATCTGCATT 35737 || ||||||||| Sbjct 4076 GAAGATCTGCATT 4064 >seq177860 Length=2647 Score = 100 bits (110), Expect = 3e-16 Identities = 167/239 (70%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 35504 TTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAA 35563 ||| | |||||| | | |||||||||| ||| | || ||||||||| |||||||| Sbjct 2597 TTAGTACCACCATGAAGTCTCAACACCAGATGAAGTGTGGACTCCTTTTGGATGTTGTAG 2538 Query 35564 TCGGCCA--AGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 || | || | || | | || ||||||||||| || || || |||| || || ||| | Sbjct 2537 TCAGACACTAAGTATGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTCCTGAT 2478 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCG 35681 | | | ||| | |||||| ||| |||||| ||| | | || | | ||||| | Sbjct 2477 CAGGAAGAATTC-CTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATGGTGTCCAAGG 2419 Query 35682 ATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 ||| |||| | ||||| ||||| ||||| | || ||||| || |||||||| ||| Sbjct 2418 GTTCAACCTTGAGTGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATCCTG 2360 >seq106596 Length=6504 Score = 82.4 bits (90), Expect = 7e-11 Identities = 134/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || || ||||| || | || ||| | | || ||||||||||| || ||||| Sbjct 5516 CTCTTTCTGGATCTTGTAGTCAGACAGGGTGCAGACATCTTCCAGCTGCTTGCCTGCAAA 5457 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || || ||||||||| | |||| || || ||||| ||||||| ||| | | Sbjct 5456 GAT-TCCCTCTGCTGGTCAGGGGGAATGCCCTTTTTGTCTTGGATCTTTGCCTTGACCTT 5398 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||| ||||||| ||||| || || || |||| || | || Sbjct 5397 CTCAATAGTGTCTCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTGCAT 5338 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 5337 AAAGATCTGCAT 5326 >seq66926 Length=10282 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 10142 CTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 10201 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||| || ||||||||| | || | || ||||||||| |||||| Sbjct 10202 GATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTT 10249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448818785936800