Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq141308 100 3e-16 seq31296 100 3e-16 seq148632 95.1 1e-14 seq66926 91.5 1e-13 seq271237 87.8 2e-12 seq177860 84.2 2e-11 >seq141308 Length=4330 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| |||| || ||||| || ||||| || || || |||||||||||| Sbjct 4291 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 4232 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||||||||| |||| | |||||| || || || Sbjct 4231 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4172 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | ||||| | || || Sbjct 4171 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACC 4112 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| || || || | || || ||||| || |||||| Sbjct 4111 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCATT 4064 >seq31296 Length=16870 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||| ||||||||||| | ||| || | Sbjct 14455 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGCAA-AGTACG 14513 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| ||||| | || |||| | ||||||||| || || || ||||| Sbjct 14514 GCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTC 14573 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || | || || ||||| || | ||||| || | || || ||||| || Sbjct 14574 CTTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACCTCGAGCGT 14633 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || | || || |||||||| ||||| Sbjct 14634 GATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 14672 >seq148632 Length=3950 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || |||| |||||||| ||||||||||| | ||| || || Sbjct 368 AGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAA-AGTATG 310 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| ||||| ||||| |||| ||||||||| || | || ||||| Sbjct 309 GTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGACGAATTCCTTC 250 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || ||||| || | ||||| || | ||| || ||||| | Sbjct 249 CTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCAT 190 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || | | || || | |||||| ||||| Sbjct 189 GATGGTTTTCCCCATAAGGGTCTTCATGAAAATCTGCAT 151 >seq66926 Length=10282 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| |||| || ||||| || ||||| || || || |||||||||||| Sbjct 10107 CCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 10166 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||||||||| |||| | |||||| || || || Sbjct 10167 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 10226 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 |||||||| || || || || || Sbjct 10227 ATGCCTTCCTTGTCCTGGATCTT 10249 >seq271237 Length=352 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/228 (70%), Gaps = 11/228 (5%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||| ||||||||||| | ||| || | Sbjct 6 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAA-AGTACG 64 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| ||||| ||||| |||| | ||||||||| || || || ||||| Sbjct 65 GCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTC 124 Query 134615 TTTTTCTTGAATTTT----TTG---TTTGACCGCGTCCAAT--GTGTCGGACGATTCCAC 134665 || || || || || ||| ||| | || | ||||| || | ||| || Sbjct 125 CTTATCCTGGATCTTGGCCTTGACATTTTTTTTCTGTCATTTAGTGTCCGAGGGTTCAAC 184 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| || || | || || || ||||| ||||| Sbjct 185 CTCAAGCGTGATGGTTTTCCCCGTAAGGGTCTTCACTAAAATCTGCAT 232 >seq177860 Length=2647 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCA-ACGGTGT 134553 |||| |||||| || || || ||||| |||||||| ||||||||||| | || || | Sbjct 2582 AGTCTCAACACCAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACACTAAGTAT 2523 Query 134554 GAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 | || || ||||| ||||| || || |||| | || |||||| || | || || | Sbjct 2522 GGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTCCTGATCAGGAAGAATTCC-T 2464 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAG 134673 | || || || || || ||||| || | ||||| | | ||| || | ||| | Sbjct 2463 CCTTATCCTGGATCTTGGCCTTGACATTTTCTATGGTGTCCAAGGGTTCAACCTTGAGTG 2404 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | |||||||| || || | || || |||||||| ||||| Sbjct 2403 TGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 2364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503184375959200