Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq42668 120 4e-22 seq36452 107 3e-18 seq125977 100 4e-16 seq18550 100 4e-16 seq55738 87.8 2e-12 >seq42668 Length=14146 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| ||||||||||| |||||| ||| | || || || || || || | Sbjct 540 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 481 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || ||||||||||||||||| ||||| || || ||||| || | || | ||| Sbjct 480 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCAGCCATCTTGAGAACAGTCT 421 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| |||||||| | |||||| | | ||| || | ||||| |||| Sbjct 420 TCTGAGAGATTTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 370 >seq36452 Length=40126 Score = 107 bits (118), Expect = 3e-18 Identities = 219/315 (70%), Gaps = 13/315 (4%) Strand=Plus/Minus Query 37359 AAACC-CTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATTCAGATCAGGAT 37417 ||||| | ||||||||| | ||| ||| || | || ||||| | || || |||| Sbjct 26947 AAACCTCCTGAGCTCCTTTCAGTGTT--ATCCAGTGTTTCAACTTC--TAAG-TCTGGAT 26893 Query 37418 AATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTATTTTAAAATTAC 37477 || | || |||| | | || ||||| || || | ||| || | |||| || ||| || Sbjct 26892 AAAAAATTCGTTCACAAATGAGCTGTGCAATCCGATCACCTTTTTTTACTTCAAACTTCT 26833 Query 37478 ATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTCATCGATTACTC 37537 ||||||| || | ||| | || |||||||| || ||||||||||| || || || | Sbjct 26832 CTTTTCCAAAGTTAAACAGCACAACACCAATATTTCCTCTATAATCTTCGTCTATGACAC 26773 Query 37538 CGCCTCCTACATCAAT-ACCT--TTTAGAGACAAACCCGATCTAGGAGCTATTCTTCCAT 37594 || |||||||||| || | | |||| | ||| || || | | ||||| |||||||| Sbjct 26772 CGGCTCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCGTGAAGCTACTCTTCCAT 26713 Query 37595 AACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGTCTTTCTCCA--GG 37652 | || || | || ||| |||| |||||||| | ||| || ||||||||| || Sbjct 26712 AGCACCCAGAAGGAACAGTGATCTGAATGTCTGTTTTCA-CAA-TGGCTTTCTCCATGGG 26655 Query 37653 AAGGATGGTATAATC 37667 | || |||||||| Sbjct 26654 TGGTATTGTATAATC 26640 >seq125977 Length=8618 Score = 100 bits (110), Expect = 4e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | |||||| |||||||| |||| ||||||||||| ||||| | ||||| |||| Sbjct 5044 ACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAA 4985 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATAT 39711 |||| || |||||||| || || || || |||||||| ||||| Sbjct 4984 ATGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATAT 4942 >seq18550 Length=27441 Score = 100 bits (110), Expect = 4e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || || || ||||||| | Sbjct 19225 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 19284 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | ||||||||||| || | |||||| | || || ||| | || ||||| | ||||| | Sbjct 19285 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 19344 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || ||||| | || || ||||| || |||||||||| Sbjct 19345 GTTCCACTGTGGTGACTCCACTGTACAGGCCTTGGATTACTTTCATGG 19392 Score = 96.9 bits (106), Expect = 5e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 ||||||| ||| || | | || || ||||| || | || ||||| || ||||| ||| Sbjct 14355 CTAGACAGTTGTGGACGGTTGGTCCCGGCATTGAAGAGAGTTGGAGAGGCATGAGTAAAC 14414 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATT 70089 || || ||||||||||| ||||| |||||||| || | || ||||| | ||||| Sbjct 14415 CACTTCTCAGAAAGCAGGTTGTACGTTTCAATTGCAGCGTCGATATCTTCTTTGTGAATC 14474 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTC 70127 || | | || | ||||||||||||||| |||| ||| Sbjct 14475 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTC 14512 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||| Sbjct 8386 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 8445 Query 69577 CA 69578 || Sbjct 8446 CA 8447 >seq55738 Length=16555 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 39275 AAGTCAACATCTAAAGAAAAATGATTATCTTCT---TGTGACATAACTCCCATTTTTTGG 39331 |||||| |||| || | ||| ||| ||| || | |||||| || ||||| | || Sbjct 11159 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 11100 Query 39332 TATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATG 39391 || || || || || ||||| || || || || || ||||| | ||| |||||||||||| Sbjct 11099 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 11040 Query 39392 AAATCAAACGGATT 39405 || ||||||||||| Sbjct 11039 AAGTCAAACGGATT 11026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 683899624274400