Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq125977 145 6e-30 seq55738 114 1e-20 seq40768 89.7 4e-13 seq11430 89.7 4e-13 seq152803 86.0 5e-12 >seq125977 Length=8618 Score = 145 bits (160), Expect = 6e-30 Identities = 204/284 (72%), Gaps = 2/284 (1%) Strand=Plus/Plus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 || || | ||||||||| | ||||| || ||||| ||| |||| ||||| || ||| Sbjct 4214 TTACTGAGAGAAAATCCCCGCCGTTTTGTTGTCTTTCCCATTGAATACCATGATATCTGG 4273 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 || |||||||| ||||| |||| || || ||||| || || || || || | | || Sbjct 4274 CAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACTGCTGAGGAGGTGGACCTCTCCAAG 4333 Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 || | ||| ||| ||| | |||| | || | |||||||||||||| || || Sbjct 4334 GATATTCAACACTGGGAAGCACTGAAACACGACGAGAGACATTTTATATCTTACGTCCTG 4393 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGT-TAGTCGGTTTGCGCA 43914 || || ||||| ||||| || | ||||||||||||||| |||| ||| | ||| || Sbjct 4394 GCTTTCTTTGCGGCGAGTGATGTCATAGTCAATGAAAATCTGGTAGAGT-GCTTTAGCCA 4452 Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAA 43958 ||||||||| | |||| || || ||||| ||||| || |||| Sbjct 4453 AGAAGTTCAGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAA 4496 Score = 116 bits (128), Expect = 3e-21 Identities = 181/258 (70%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 ||||| ||||| || ||||||||||| ||||| || ||||| ||||||||||| || || Sbjct 4567 TGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTACAGGCTCCTC 4626 Query 44000 ATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACA 44059 || || || ||||| |||||| | |||| | | | || ||||| || || ||| Sbjct 4627 ATTGACACTTACATTAAAGATTCCAAAGAGAGGGAATATCTCTTCAATGCTATTGAGACA 4686 Query 44060 GTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATGAT 44116 | ||| | | ||| | || || | ||||||||| ||||| | | | | | Sbjct 4687 ATGCCTTCTGTGAAAAAGAAGGCCGTCTGGGCCCTGTGTTGGATTGGGGACAAAGAGGCT 4746 Query 44117 TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCG 44176 | | |||||||||| |||| || | ||| | ||| ||||| || ||||| || || || Sbjct 4747 ACCTATGGAGAACGAGTTGTGGCCTCTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCT 4806 Query 44177 TTTGCGGCCATATTTTGG 44194 ||||| | ||||| ||| Sbjct 4807 TTTGCATCAATATTCTGG 4824 >seq55738 Length=16555 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 || || | ||||||||| | || || || ||||| || |||| ||||| || ||| Sbjct 6441 TTACTGAGAGAAAATCCCCGCCGCTTCGTGGTCTTTCCCATCGAATACCATGATATCTGG 6500 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 || |||||||| ||||| |||| || || ||||| || || || || || | | || Sbjct 6501 CAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGGTGGACCTCTCCAAG 6560 Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 || | ||| ||| || | ||||| | || | ||||||||||||| || || Sbjct 6561 GATATTCAACACTGGGAAGCGCTGAAACCGGACGAGAGACATTTTATATCTCACGTCCTG 6620 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903 || || ||||| ||||| || || ||||||||||||||| |||| ||| Sbjct 6621 GCATTCTTTGCGGCGAGTGATGGCATAGTCAATGAAAATCTGGTGAGT 6668 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 ||||||||||| | |||| || || ||||| ||||| || ||||||||||| ||||| Sbjct 7749 CAAGAAGTTCAGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 7808 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||||||||| || || || || ||||| |||||| Sbjct 7809 ATACATTCTGAAATGTACAGTCTCCTCATTGACACTTACATTAAAGAT 7856 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| |||| |||||||| || |||||||||||||| | ||||| || |||||||| ||| Sbjct 11020 GTAGAAAATCCGTTTGACTTCATGGAAAATATTTCACTAGAAGGGAAGACAAACTTCTTT 11079 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || || || || || || |||||| | ||||| || ||| Sbjct 11080 GAGAAGCGAGTGGGCGAGTATCAGAGGATGGGGGTGATG 11118 >seq40768 Length=25399 Score = 89.7 bits (98), Expect = 4e-13 Identities = 113/156 (72%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTT------CT 19602 |||||||| || || | |||||| | || || ||||| ||||| ||||| || Sbjct 15187 TTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGGAGCATGGCT 15246 Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 ||| | ||||| ||||||||||| ||||| || || ||||| || | || || ||| Sbjct 15247 GGTAGCACAGGAGTTCATGACACTGTGGTCAACCAGCTACTGTCCAAGATTGATGGCGTT 15306 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACT 19698 | ||||||||||| || | |||||||| ||| || Sbjct 15307 GAGCAACTGAATAACATCCTCGTTATTGGTATGTCT 15342 >seq11430 Length=26483 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| ||||| || | ||||| || || || ||||| || |||| Sbjct 7698 TGATGGCACTGCCTCCTTGCCACGCCCTCTGTCAATTCTATGTAGCGAATGGGGAGCTGT 7639 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || | || || || ||||| || ||||| || || || || || ||||| || | Sbjct 7638 CTTGCCAGCTCTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTCAACATTGCCA 7579 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | ||||| |||||||| || ||||||||||| Sbjct 7578 GCTATGCCCTGCTCACCTACGTGATTGCACAC 7547 >seq152803 Length=3745 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| |||||||||||||| ||||| || || ||||| | Sbjct 1687 AAAATCCCTTTGATTTTATGGAAAACATTTCGTTGGAAGGGAAAACGAATTTCTTTGAGA 1628 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | || ||| ||||| ||||| | | |||||| Sbjct 1627 AGCGAGTTTCTGAATACCAGCGGTTTGCAGTCATG 1593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395758373512300