Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq31296 143 3e-29 seq141308 141 1e-28 seq68848 131 2e-25 seq271237 129 7e-25 seq93163 114 1e-20 seq66926 98.7 1e-15 seq57751 98.7 1e-15 seq224230 91.5 2e-13 seq35487 86.0 7e-12 seq47344 84.2 2e-11 seq25405 84.2 2e-11 >seq31296 Length=16870 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| ||||| || || || || || || ||||||||| | Sbjct 14672 ATGCAGATTTTCGTGAAGACCCTTACAGGGAAAACCATCACGCTCGAGGTTGAGCCCTCA 14613 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || | ||| ||||| ||||||||||| || ||| Sbjct 14612 GACACTATAGAAAATGTCAAGGCCAAGATCCGGGATAAGGAAGGAATTCCTCCTGATCAG 14553 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || |||| ||||| || || |||| ||||| | | ||||| || Sbjct 14552 CAGAGGCTGATCTTCCCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGCCTGACTACAAC 14493 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| |||||||| || ||| | ||||| ||||| Sbjct 14492 ATCCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGTGGTGG 14446 >seq141308 Length=4330 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | | Sbjct 4064 AATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 4123 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | || | ||||| || || ||||||||||| || || || || ||||| Sbjct 4124 TGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 4183 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 4184 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 4243 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || || ||| |||| || | ||||| Sbjct 4244 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGCCTCAGGGGTGG 4291 >seq68848 Length=10048 Score = 131 bits (144), Expect = 2e-25 Identities = 166/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || | |||||||| || ||||||||||| || | || Sbjct 7491 ATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCAAGCCCAGT 7432 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| | || || |||||||| || || || || |||||| Sbjct 7431 GACACCATCGAGAATGTCAAGGCCGAGATCCAAGACAAGGAAGGCATCCCACCTGACCAG 7372 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || ||||||| | ||||| | ||||| || Sbjct 7371 CAGAGGCTGATATTTGCAGGCAAGCAGCTGTAGGATGACTGGACCCTGTCCGACTACAAC 7312 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || |||||| | || | || | ||||| || || || Sbjct 7311 ATCCAAAA-GAGTCCACTTTGCACTTGGTGCTTCGTCTGCGTGGCGG 7266 >seq271237 Length=352 Score = 129 bits (142), Expect = 7e-25 Identities = 168/231 (73%), Gaps = 11/231 (5%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA--G 27463 ||||| || || || ||||| ||||| || || || || || ||||||||||| | | Sbjct 232 ATGCAGATTTTAGTGAAGACCCTTACGGGGAAAACCATCACGCTTGAGGTTGAACCCTCG 173 Query 27464 G--------TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCC 27515 | ||| || | |||| | ||||| || || ||||| ||||| |||||||| Sbjct 172 GACACTAAATGACAGAAAAA-AAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCC 114 Query 27516 TCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGC 27575 ||| || |||||| | || || |||||||| ||||| || || |||| ||||| | | Sbjct 113 TCCTGATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTC 54 Query 27576 AGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 ||||| || |||||||||| ||||| |||||||| || ||| | ||||| Sbjct 53 TGACTACAACATCCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCG 3 >seq93163 Length=7565 Score = 114 bits (126), Expect = 1e-20 Identities = 159/222 (72%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 7238 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 7179 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAA---TTCCTCCAGA 27521 ||| | ||| | ||| | ||||| || || |||||||| ||||| | | || | || Sbjct 7178 TGACACCATAGAGAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCACCCTGCCCCGCGA 7119 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 |||||||| || || |||| || ||||| || || |||| | || || | || || Sbjct 7118 CCAGCAGCCACTCATCTTTGTGGGCAAGCAGCTGGAAGATGGCCACACTCTCTCTGATTA 7059 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | |||| || || ||||| || || || ||| | ||||| Sbjct 7058 CAGCATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCT 7017 >seq66926 Length=10282 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || ||||||||||| || || || || ||||||||| | || || ||||| Sbjct 10255 AAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCA 10196 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| || || |||| || ||||| | ||||| || |||| || || ||||| Sbjct 10195 GGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACC 10136 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || ||| |||| || | ||||| Sbjct 10135 CTGCACCTGGTCCTGCGCCTCAGGGGTGG 10107 >seq57751 Length=11510 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| | ||| |||||| ||||| || ||||| ||| | | Sbjct 10894 AATGCAAATCTTTGTGAAGACCCAGACCCACAAGACCATTACCCTAGAGGTGGAGCCCAG 10835 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 | | ||||| ||| |||||| || |||||||| || ||||| || || || ||||| Sbjct 10834 TAACGCCATTGAGAATGTGAAGGTCAAGATTCAGGATAAAGAGGGCATACCCCCTGACCA 10775 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551 ||| | ||| ||||| || ||||| Sbjct 10774 ACAGAAGCAAATCTTTGCAGGCAAGCA 10748 >seq224230 Length=2161 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || ||| ||||||| || || || ||||| || | | Sbjct 1978 AATGCAAATCTTCGTGAAGACCCTGACCAGCAAGACCATCACCCTGGAGGTGGAACCCAG 1919 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| ||| ||||||| || || ||||| || ||||| || || || ||||| Sbjct 1918 TGACACCATCAAGAATGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGACCA 1859 Query 27525 GCAGC 27529 ||||| Sbjct 1858 GCAGC 1854 >seq35487 Length=15755 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 12/231 (5%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG---TCA 27462 ||||| || || | ||||| |||| || ||||| || || ||||||||||| ||| Sbjct 15294 ATGCAGATTTTCATAAAGACCCTTATGGGGAAGACCATCACCCTTGAGGTTGAACCCTCA 15353 Query 27463 GGTGATAGCATTGCAA-ATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 | || || | | || || | || | || || |||| |||||||||||||||| || Sbjct 15354 GATGCTA---TAGAAAGATGTAAAAACCAAGATCCAGGTTTAGGAGGGAATTCCTCCTGA 15410 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || | || || ||||||||||||| || || |||| | ||| | ||||| Sbjct 15411 TTGGCTAAGGCTGCTTCTTGCTGGTAAGCAGCTGGAAGATG-CCATACTTT----GACTA 15465 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | |||||||| || || ||||||| || ||| | |||| ||||| Sbjct 15466 CAACATTCAAAAGGAGTCTACCCTTCATCCTGTGTTGGGACTTCATGGTGG 15516 >seq47344 Length=22623 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 11/231 (5%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG---TCA 27462 || || || ||||| ||||| |||| | |||||||| || ||||||| ||| ||| Sbjct 12266 ATACAGATTTTTGTAAAGACCCTTATGAGGAAGACTATCACCCTTGAGGCTGAACCCTCA 12207 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | || || | |||| |||| | ||||| |||| || ||||||||||||| || Sbjct 12206 GATGCTAAA---GAAAATGTGAAAACCAAAATCCAGGTTAAAAAGGGAATTCCTCCTGAT 12150 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || | || || ||||||||||||| || || |||| | ||| | ||||| Sbjct 12149 TGGCTAAGGCTGCTTCTTGCTGGTAAGCAGCTGGAAGATG-CCATACTTT----GACTAC 12095 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || | ||||||| || || ||||||| || ||| | ||| |||||| Sbjct 12094 AACATTGAAAAGGAGTCTACCCTTCATCCTGTGTTGGGATTTCATGGTGGA 12044 >seq25405 Length=23031 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||||||||| ||| | || Sbjct 16347 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 16406 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| | ||||| || || || |||||||| || Sbjct 16407 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGG 16450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567812012715200