Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq41825 138 1e-27 >seq41825 Length=16783 Score = 138 bits (152), Expect = 1e-27 Identities = 567/886 (64%), Gaps = 21/886 (2%) Strand=Plus/Plus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 |||||| || || ||||| || ||||||||||| || || | ||| | || ||||| Sbjct 8228 GCCCCTTAGTAAAGAGGAGGTAGACTTTCCCATCGCGTATTCCGTAGTGGTTCATCACAA 8287 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 || || ||| | || | ||||||||||||||||| || ||||| |||| ||| | Sbjct 8288 AATTGAAATGCTTGAAAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCAT 8347 Query 13790 CCACGTGGACTCCAAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847 ||||||||| || | | || | || | ||| | | || ||| || Sbjct 8348 TCACGTGGACAAAAAAGCAGAGGAGCCCTTTTTAGCCGCAGTGAT--GGGCATTGCGTCC 8405 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 ||||| ||||| ||||| || |||| | |||| || || | ||||||||| Sbjct 8406 TGCTTGAAGAACGTCTTTGTGGCCAGCCAGCTGGAGAACGTCGTTTATGCGTCCTGGAGT 8465 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 || || ||||| || |||| ||||||| ||||||| || | | || |||| | Sbjct 8466 CGGGTTCAGGCTGATCTCAACTGCATGAAGGACCTGTACAGCATGAGTGCAAACTGGAAG 8525 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 ||| || ||||||| || |||||||||||||| | || ||||||||||| || || || Sbjct 8526 TACTTGATCAACCTTTGTGGGATGGACTTCCCTATTAAAACCAACCTGGAAATGGTCAGG 8585 Query 14028 GCGCTGAAGGC---CCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGC--CCAACC 14082 |||||| | |||||| | | ||| |||||| | ||| |||| |||| Sbjct 8586 AAACTGAAGTCATTCCTGGGTG---AAAACAACCTGGAAACTGAGAAGATGCCTCCAA-- 8640 Query 14083 ACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACA 14142 ||||| | | | | ||| | ||| || | || || | || |||| Sbjct 8641 ACAAGGAGGAAAGGTGGAAGAAACGACACACCGTTG---TCGATGGGAAGCTGACGAACA 8697 Query 14143 CCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACT 14202 | || | ||| |||| |||||| |||| | || | || | || | || |||| Sbjct 8698 CTGGGGTGGCCAAAGCCCAGCCGCCCCTCACAACTCCTCTTTTCTCAGGCAGTGCCTACT 8757 Query 14203 TTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCA 14262 ||| ||||| |||| | || | || || || | | | | | | ||| Sbjct 8758 TTGTGGTCAGTAGGGAATATGTAGGCTATGTGCTAGAAAATGGGAACATCCAAAAGTTCA 8817 Query 14263 TGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAA 14322 || | ||| |||||||||| ||||| || ||| |||| ||||||||| | || || | Sbjct 8818 TGGAGTGGGCACAGGACACGTATAGCCCAGATGAGTACCTCTGGGCCACCATCCAAAGGA 8877 Query 14323 TGTACGGGACGCCCGGGGGGATCCCCGTTCACGTC--AAGTACGACACCTCGGACATGTG 14380 | | || | || || || || ||| | | ||||| ||| || |||||| Sbjct 8878 --TCCCTGAAGTCCCTGGTTCTCTCCCCTCAAGCCATAAGTATGACTTGTCCGACATGAA 8935 Query 14381 GGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCT 14440 || | ||||| ||||||||||| |||| || || ||| | ||||| || | Sbjct 8936 TGCTGTCGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAAGGCGCTCC 8995 Query 14441 GTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGT 14500 ||||| || ||| ||| |||| || | | || | ||| | ||||| | || ||| | Sbjct 8996 TTACCCACCGTGCAGCGGAGTCCATGTGCGCTCCGTGTGCGTTTTCGGAGCTGGTGACTT 9055 Query 14501 GAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || ||| || || | ||| | || ||||| ||||| ||| Sbjct 9056 GAGCTGGATGCTTCGCAAACACCACTTCTTTGCCAATAAGTTTGAC 9101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655853428249600