Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq11430 132 4e-26 seq1257 87.8 1e-12 >seq11430 Length=26483 Score = 132 bits (146), Expect = 4e-26 Identities = 131/167 (78%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 ||| || |||| ||| || |||| ||| ||||| || | |||||||| ||||| ||||| Sbjct 7535 TAGGCCTGTGATGTGTGCAATCACGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGG 7594 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC-GTCGC 30059 || || || ||||| || || ||||||||||||||||| || || ||||| || |||| Sbjct 7595 CACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGC 7654 Query 30060 TCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 | || || || ||||| | ||||||||| ||||| || ||||| ||| Sbjct 7655 T-ACATAGAATTGACAGAGGGCGTGGCAAGGAGGCAGTGCCATCAGG 7700 Score = 87.8 bits (96), Expect = 1e-12 Identities = 126/174 (72%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || ||||| ||||||||||| || || || || |||||||| Sbjct 12945 CATATCTTTGTAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTC 13004 Query 30283 TCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 || || | | |||| ||| ||| |||||| ||| |||| ||| || ||||| | Sbjct 13005 CCCTTCCTGTC-GTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCAT 13063 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30395 ||||||| | || || || || || ||||| | |||||||| || |||| Sbjct 13064 CCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGATCC-CTGA 13116 >seq1257 Length=62205 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || ||||| |||||||| |||| || || |||||| | | ||||| |||||| || || Sbjct 31892 TTGAGCTCTCTGCTGAGAACTATATTGATTCTGTCTTTTAAAGGTCGATTCTTCTCAGGA 31951 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || || | ||||| ||||| | |||||| || ||| Sbjct 31952 ATGGAGAACCAGGTTTTCCGGCCCATAATCACAAGGTTCTGTTTACCT 31999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404574954322320