Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq89429 176 4e-39 seq11430 156 4e-33 seq99039 91.5 1e-13 >seq89429 Length=9158 Score = 176 bits (194), Expect = 4e-39 Identities = 338/496 (68%), Gaps = 7/496 (1%) Strand=Plus/Plus Query 34095 GGGAGTGGCAGTATCTGTATCAGGTGGCGCGGATCCTCAGGGAGGGCTACCGGAAGGGGG 34154 || || ||||||||||| ||||||| || || | | || | | |||| || Sbjct 3968 GGCAGGGGCAGTATCTGGGGCAGGTGGAGCCCATTATGCGCTGCGGTTTC---AAGGAGG 4024 Query 34155 ACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCGGG 34214 ||| | || || || ||| | || ||||| |||| ||||| | ||| ||||| | | Sbjct 4025 ACCACATGGGCACTGGCACCTTGTCGGTGTTAGGCATGCAGGCGCCATAGAACCTGAGAG 4084 Query 34215 GCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGC 34274 |||||||| ||||| || || ||||| |||| |||||||| || | ||||| ||| Sbjct 4085 ATGAATTTCCTCTGCTCACAACCAAACGAGTGTTCTGGAAGGATGTTTTAAAGGAGTTGC 4144 Query 34275 TGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCT 34334 ||||||| | | ||| |||| | | || || || | ||| || |||| |||| Sbjct 4145 TGTGGTTTATCAAGGGATCCACAATTGCTAAAGAACTGGCCTCCAAAGGAGTGAGAATCT 4204 Query 34335 GGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGG 34394 |||| || | ||||| ||||| |||||||||| ||| ||| | | | |||| | Sbjct 4205 GGGATGCCAATGGGTCCCGAGATTTTCTGGACAGCATGGGATTCTCTGCAAGACAGGAAG 4264 Query 34395 GCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGA 34454 | | ||||||| || || || ||||||| |||||| ||||| | || || | | Sbjct 4265 GGAAGCTGGGCCCAGTTTATGGTTTCCAGTAGAGACATTTTGGATCAGACTACAAAGATA 4324 Query 34455 GCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGA 34514 || | || || ||| | || |||| ||| ||||||| | ||||| ||||| | | Sbjct 4325 TGGATTCAGATTACTCGAGTCAAGGAGTAGACGAGCTGCAAAAAGTGATTGACAC--TCA 4382 Query 34515 AGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTC 34574 | | ||||| || ||||| ||| ||||||| | ||||||| || ||||| || | Sbjct 4383 AAACCAGTCCTGACGAGAGAAGAATCTTGATGTGTCC--GGAACCCAAAAGATCTTCCCC 4440 Query 34575 TGATGGCGCTCCCCCC 34590 ||||||| || || || Sbjct 4441 TGATGGCACTTCCTCC 4456 Score = 176 bits (194), Expect = 4e-39 Identities = 338/496 (68%), Gaps = 7/496 (1%) Strand=Plus/Minus Query 6755 GGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTG 6814 || || || |||||||| || ||||| || ||||||| | ||||||| ||| ||||| Sbjct 4456 GGAGGAAGTGCCATCAGGGGAAGATCTTTTGGGTTCC--GGACACATCAAGATTCTTCTC 4399 Query 6815 TCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCC 6874 || ||||| | || | ||||| ||||| | ||||||| ||| |||| || | | Sbjct 4398 TCGTCAGGACTGGTTTTGA--GTGTCAATCACTTTTTGCAGCTCGTCTACTCCTTGACTC 4341 Query 6875 GAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAG 6934 || || || | || | | || || | ||||| |||||| ||||||| || || Sbjct 4340 GAGTAATCTGAATCCATATCTTTGTAGTCTGATCCAAAATGTCTCTACTGGAAACCATAA 4281 Query 6935 ACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGA 6994 || ||||||| | || |||| | | | ||| ||| |||||||||| ||||| Sbjct 4280 ACTGGGCCCAGCTTCCCTTCCTGTCTTGCAGAGAATCCCATGCTGTCCAGAAAATCTCGG 4221 Query 6995 GACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCC 7054 ||||| | || |||||||| |||| || ||| | || || || | | |||| Sbjct 4220 GACCCATTGGCATCCCAGATTCTCACTCCTTTGGAGGCCAGTTCTTTAGCAATTGTGGAT 4161 Query 7055 CCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTC 7114 ||| | | |||||||||| ||||| | || |||||||| |||| ||||| || || Sbjct 4160 CCCTTGATAAACCACAGCAACTCCTTTAAAACATCCTTCCAGAACACTCGTTTGGTTGTG 4101 Query 7115 AGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTC 7174 ||||| |||||||| | | ||||| ||| | ||||| |||| ||||| || | ||| Sbjct 4100 AGCAGAGGAAATTCATCTCTCAGGTTCTATGGCGCCTGCATGCCTAACACCGACAAGGTG 4041 Query 7175 CCCGTCCCGGTCCGGTCCCCCTTCCGGTAGCCCTCCCTGAGGATCCGCGCCACCTGATAC 7234 || || || | ||||| |||| | | || | | || || ||||||| | Sbjct 4040 CCAGTGCCCATGTGGTCCTCCTT---GAAACCGCAGCGCATAATGGGCTCCACCTGCCCC 3984 Query 7235 AGATACTGCCACTCCC 7250 |||||||||| || || Sbjct 3983 AGATACTGCCCCTGCC 3968 >seq11430 Length=26483 Score = 156 bits (172), Expect = 4e-33 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||| ||| |||||||| || || || ||||||||||| ||||| || | ||| Sbjct 7548 TGTGCAATCACGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACGCCCAGGCCC 7607 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || ||||| || | || ||||||||||| ||||||||||||||||| || |||||||| Sbjct 7608 ATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGCTACATAGAATTGA 7667 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| || || || |||||||| || ||||| Sbjct 7668 CAGAGGGCGTGGCAAGGAGGCAGTGCCATCAGGGGAAGATC 7708 Score = 156 bits (172), Expect = 4e-33 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || |||||||| || || || |||||| ||||||| |||||||| || |||||| Sbjct 7708 GATCTTCCCCTGATGGCACTGCCTCCTTGCCACGCCCTCTGTCAATTCTATGTAGCGAAT 7649 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||||||||| ||||||||||| || | || ||||| ||||| | || ||||| ||| Sbjct 7648 GGGGAGCTGTCTTGCCAGCTCTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTC 7589 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || || || |||||||| ||| |||| || || Sbjct 7588 AACATTGCCAGCTATGCCCTGCTCACCTACGTGATTGCACA 7548 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| |||||||||||||| || || || ||||||| ||| || |||| Sbjct 12955 TAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGT 13014 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | | ||| ||| | |||||||||| ||||| ||||| | || |||||||| || Sbjct 13015 CGTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTC 13074 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || || ||| || || || || | || |||| Sbjct 13075 ACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGG 13108 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || || || || ||| || |||| |||||||| || | ||||| | Sbjct 13108 CCACAAATGCTAAAGAACTGTCCTCCAAAGGAGTGAGAATCTGGGATGCCAATGGGTCCC 13049 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||| |||||||||| | ||| ||| | | || |||| || ||| ||||||| || | Sbjct 13048 GAGATTTTCTGGACAGCCTGGGATTCTCTGCACGACAGGAAGGGGACCTGGGCCCAGTTT 12989 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || |||||||||||||| ||||| || || || Sbjct 12988 ATGGTTTCCAGTGGAGACATTTTGGCGCAGACTA 12955 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 || |||||||| || ||||| | ||| ||||||||||||||||| || | |||||| Sbjct 8391 TTTGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 8450 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC 6885 ||||| | ||||||||||| |||| || ||||| || || || Sbjct 8451 ATCACTTTTTGCAGCTGGTCTACTCCTTGACCCGAGTAATCTGC 8494 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 || || || ||||| || |||| ||||||||||| | ||||| |||||| | || Sbjct 8494 GCAGATTACTCGGGTCAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCAAAACC 8435 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 ||||||||||||||||| ||| | ||||| || |||||||| || Sbjct 8434 AACCCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAA 8391 >seq99039 Length=7077 Score = 91.5 bits (100), Expect = 1e-13 Identities = 289/445 (65%), Gaps = 6/445 (1%) Strand=Plus/Plus Query 34219 ATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTG 34278 |||||| |||| || || ||| | | || || | || || | || ||| ||||||| Sbjct 2516 ATTTCCAGTGCTCACAACCAAATGAGCGTTCTATACGGATGTTCTGGAAGAGTTGCTGTG 2575 Query 34279 GTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGA 34338 ||| |||||| |||| ||||| || | || || ||| ||| || || | || Sbjct 2576 CTTCTTGAGGGAT-CCACAAACACTAAAGGACTGTCCTCCAAGGGAGTTAAAAGTTGTCG 2634 Query 34339 CGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGA 34398 || | || || | ||| || |||||| | ||| || || | | |||| | | Sbjct 2635 TGCCAATGGCTCCCTAGATGTTTTGGACAGTCAGGGATTTTCAACACAACAGGAAGAGCA 2694 Query 34399 CTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGA 34458 | |||| || || || || ||| |||| |||| |||||| || || | | || Sbjct 2695 CCTGGGACCAGTTTATGGTCTCCCTAGGAGGCACTCTGGGGCAGACTACAAAGATATGGA 2754 Query 34459 AGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACC-TTGAAGC 34517 | || | || | || |||| ||||| ||| || | |||| |||| || || Sbjct 2755 TTCAGATGACTCCAGTCAAGGAGTAGACCAACTGTAGAAAGTGA----CACCATTAAAAA 2810 Query 34518 GGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGA 34577 | |||| | ||||| | | | | ||||| || ||| || || || | ||||| | Sbjct 2811 TCAGTCCTGGTAACAGATGAAGCATCATGTGTGCCCCGAATCCAAAAGACTTTCCTCTAA 2870 Query 34578 TGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCT 34637 ||| ||| || || ||||| |||||| || ||||| || | ||| ||||||||||| Sbjct 2871 TGGGGCTGCCTCCTTGCCATGTCCTCTGACAGTTCTATGTGGTGAACCAGGAGCTGTCCT 2930 Query 34638 GCCAGCTCTATCAACGATCGGGAGA 34662 |||||| || || ||| ||||| Sbjct 2931 GCCAGCCATACCAGACATCAGGAGA 2955 Score = 91.5 bits (100), Expect = 1e-13 Identities = 289/445 (65%), Gaps = 6/445 (1%) Strand=Plus/Minus Query 6683 TCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAG 6742 ||||| ||| || || ||||||||||||||||| ||| | || ||||| || ||| Sbjct 2955 TCTCCTGATGTCTGGTATGGCTGGCAGGACAGCTCCTGGTTCACCACATAGAACTGTCAG 2896 Query 6743 AGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATC 6802 ||| ||||| || || ||| |||| ||||| | || || || ||| || ||||| Sbjct 2895 AGGACATGGCAAGGAGGCAGCCCCATTAGAGGAAAGTCTTTTGGATTCGGGGCACACATG 2836 Query 6803 ACGATCCTTCTGTCATCAGGGTTCCGCTTCAA-GGTGTCGATCACGTACTGCAGCTGGTC 6861 | | | | ||||| | |||| | || || |||| |||| | || ||| ||||| Sbjct 2835 ATGCTTCATCTGTTACCAGGACTGATTTTTAATGGTG----TCACTTTCTACAGTTGGTC 2780 Query 6862 CGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCA 6921 |||| || | || | || | || | | || || |||||| |||| |||| Sbjct 2779 TACTCCTTGACTGGAGTCATCTGAATCCATATCTTTGTAGTCTGCCCCAGAGTGCCTCCT 2720 Query 6922 CTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTC 6981 ||| || || || || |||| || | |||| | | || || ||| | |||| Sbjct 2719 AGGGAGACCATAAACTGGTCCCAGGTGCTCTTCCTGTTGTGTTGAAAATCCCTGACTGTC 2660 Query 6982 CAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTT 7041 || || ||| | || || | || || | || || ||| ||| || || | || Sbjct 2659 CAAAACATCTAGGGAGCCATTGGCACGACAACTTTTAACTCCCTTGGAGGACAGTCCTTT 2600 Query 7042 GGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACAC 7101 ||||| |||| |||||| ||| ||||||| ||| || | || || | || || | Sbjct 2599 AGTGTTTGTGG-ATCCCTCAAGAAGCACAGCAACTCTTCCAGAACATCCGTATAGAACGC 2541 Query 7102 ACGTTTCGTCGTCAGCAGCGGAAAT 7126 | ||| || || |||| |||||| Sbjct 2540 TCATTTGGTTGTGAGCACTGGAAAT 2516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446298674491200